Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10350 415 / 8e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G60730 379 / 6e-131 Anion-transporting ATPase (.1) AT1G01910 88 / 1e-19 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037982 [exp] 425 / 8e-149 AT3G10350 620 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10038715 [exp] 421 / 5e-147 AT3G10350 622 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10041377 [exp] 87 / 4e-19 AT1G01910 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10036552 [exp] 87 / 5e-19 AT1G01910 576 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G037100 [exp] 425 / 7e-149 AT3G10350 592 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G225100 [exp] 423 / 3e-148 AT3G10350 599 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G078100 [exp] 96 / 4e-22 AT1G01910 580 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Potri.002G152500 [exp] 92 / 6e-21 AT1G01910 590 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02374 [flax] [poplar] ArsA_ATPase Anion-transporting ATPase
Representative CDS sequence Show only first row Show all	>Lus10021449 pacid=23179176 polypeptide=Lus10021449 locus=Lus10021449.g ID=Lus10021449.BGIv1.0 annot-version=v1.0 ATGTTGGTTCCTGCTACCGGATTCAACGACATGATAACCGGAAGCCAGAGGAAGTTCTATCTGCTAGGTGGCAAAGGAGGTGTAGGGAAAACGAGCTGTG CAGCCTCTCTTGCTGTTAAATTTGCTAACAGTGGCCATCCGACCATAGTCGTCTCGACCGACCCTGCTCACTCCTTGAGCGATTCTTTCGCTCAGGATCT GACTGGAGGGACTCTTGTTCCTGTTCAAGGGGTGGATTCTCCTTTGTTTGCTCTTGAGTTAAACCCTGAGAAAGCGAAAGAAGAGTTTCGATCGGCTCAA GAGACTGGTGGTGATAATGGTGTGAAAGAAATTATGGACAGTATGGGACTAGGCATGCTTTCTAATCAGGTTAGAAATTGGGTAGTGGTTGCGTTAGGAG ATCTGAAACTCGGCGAATTGCTCGACACACCGCCCCCCGGTATGGATGAAGCTATAGCAATGTCCAAGGCATGTCAAATTCTTGTTTTGCAATTTGCCGA ATCTCCAGAATATAGTAAATTCACTCGTATCGTCTTCGATACTGCACCAACGATGAAGAAAAAGTTGGCTTCTGCAATGTCTGCTATGAAGTCTGTTTTC GGCAAAGGAGGCGGAGAGGAAGAACACACTTCGGACAAGTTGGAGAAATTGAGGGAGAGGATGCACAAAGTTCGGGACCTTTTCCGCGACTCTGATGCCA CCGAGTTCATCATCGTGACAATTCCAACGGTTATGGCAGTCAGTGAATCGTCGAGGCTGCATGGATCCTTGAAGAAGGAAAGCGTTCCAGTTCACCGGCT CATTGTGAACCAGTGTTTACCTACGTCAGCTAACTCCGATTGCAAGTTCTGCGCAATGCGAAGGAAGGATCAAACTCGTGCGTTCGATATGATAGAGAAA GATCCGGGACTCGGCAGTTTGAAGTTGATCAAAGCGCCTTTATTCGATGCAGAGATCAGAGGTGTGCCAGCTCTGAAGTTCATGGGTGACACTGTTTGGA AATAA
AA sequence Show only first row Show all	>Lus10021449 pacid=23179176 polypeptide=Lus10021449 locus=Lus10021449.g ID=Lus10021449.BGIv1.0 annot-version=v1.0 MLVPATGFNDMITGSQRKFYLLGGKGGVGKTSCAASLAVKFANSGHPTIVVSTDPAHSLSDSFAQDLTGGTLVPVQGVDSPLFALELNPEKAKEEFRSAQ ETGGDNGVKEIMDSMGLGMLSNQVRNWVVVALGDLKLGELLDTPPPGMDEAIAMSKACQILVLQFAESPEYSKFTRIVFDTAPTMKKKLASAMSAMKSVF GKGGGEEEHTSDKLEKLRERMHKVRDLFRDSDATEFIIVTIPTVMAVSESSRLHGSLKKESVPVHRLIVNQCLPTSANSDCKFCAMRRKDQTRAFDMIEK DPGLGSLKLIKAPLFDAEIRGVPALKFMGDTVWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10350			P-loop containing nucleoside t...		Lus10021449 [exp]	0	1
AT1G05730			Eukaryotic protein of unknown ...		Lus10027051 [exp]	3.7	0.7650
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Lus10032565 [exp]	9.1	0.7181
AT5G22650		ATHD2B, HDT2, H...	ARABIDOPSIS HISTONE DEACETYLAS...		Lus10020543 [exp]	16.2	0.6403
AT2G29530		TIM10	Tim10/DDP family zinc finger p...		Lus10040718 [exp]	20.6	0.6970
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10007806 [exp]	26.2	0.6749
AT5G52630		MEF1	mitochondrial RNAediting facto...		Lus10011323 [exp]	30.6	0.6701
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10024943 [exp]	40.8	0.6534
AT1G50270			Pentatricopeptide repeat (PPR)...		Lus10023251 [exp]	41.2	0.6518
					Lus10002220 [exp]	51.8	0.6250
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10014969 [exp]	53.7	0.6503

Compare expression of checked genes

Lus10021449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.