Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60720 524 / 1e-178 Protein of unknown function, DUF547 (.1) AT2G39690 260 / 4e-80 Protein of unknown function, DUF547 (.1.2) AT5G42690 223 / 2e-65 Protein of unknown function, DUF547 (.1.2.3) AT3G12540 219 / 1e-63 Protein of unknown function, DUF547 (.1) AT4G37080 195 / 6e-54 Protein of unknown function, DUF547 (.1.2.3) AT5G47380 140 / 6e-35 Protein of unknown function, DUF547 (.1) AT5G66600 136 / 1e-33 Protein of unknown function, DUF547 (.1.2.3.4) AT1G16750 133 / 6e-33 Protein of unknown function, DUF547 (.1) AT2G23700 134 / 9e-33 Protein of unknown function, DUF547 (.1) AT1G76620 127 / 5e-31 Protein of unknown function, DUF547 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016114 [exp] 481 / 2e-168 AT5G60720 308 / 6e-101 Protein of unknown function, DUF547 (.1) Lus10032768 [exp] 208 / 3e-59 AT4G37080 495 / 3e-171 Protein of unknown function, DUF547 (.1.2.3) Lus10021756 [exp] 207 / 8e-58 AT4G37080 488 / 2e-166 Protein of unknown function, DUF547 (.1.2.3) Lus10039917 [exp] 146 / 6e-37 AT1G16750 457 / 1e-155 Protein of unknown function, DUF547 (.1) Lus10027653 [exp] 142 / 2e-35 AT3G13000 459 / 4e-156 Protein of unknown function, DUF547 (.1.2) Lus10016786 [exp] 137 / 7e-34 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10022480 [exp] 137 / 9e-34 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10033328 [exp] 134 / 1e-32 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10007795 [exp] 127 / 6e-30 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G009500 [exp] 694 / 0 AT5G60720 537 / 0.0 Protein of unknown function, DUF547 (.1) Potri.010G202900 [exp] 253 / 4e-76 AT2G39690 493 / 9e-171 Protein of unknown function, DUF547 (.1.2) Potri.014G034800 [exp] 227 / 8e-66 AT5G42690 476 / 4e-163 Protein of unknown function, DUF547 (.1.2.3) Potri.007G041100 [exp] 213 / 3e-60 AT4G37080 577 / 0.0 Protein of unknown function, DUF547 (.1.2.3) Potri.005G130000 [exp] 145 / 2e-36 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.007G033100 [exp] 140 / 4e-35 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.002G001900 [exp] 139 / 8e-35 AT1G76620 414 / 1e-139 Protein of unknown function, DUF547 (.1) Potri.009G111100 [exp] 140 / 1e-34 AT5G66600 466 / 5e-158 Protein of unknown function, DUF547 (.1.2.3.4) Potri.006G216800 [exp] 133 / 1e-32 AT3G13000 437 / 1e-147 Protein of unknown function, DUF547 (.1.2) Potri.002G128400 [exp] 131 / 2e-32 AT5G42690 316 / 2e-102 Protein of unknown function, DUF547 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04784 [flax] [poplar] DUF547 Protein of unknown function, DUF547
Representative CDS sequence Show only first row Show all	>Lus10021450 pacid=23179233 polypeptide=Lus10021450 locus=Lus10021450.g ID=Lus10021450.BGIv1.0 annot-version=v1.0 ATGGCTAGCCTTCATCATCAGCATCACCATGGCAACTTACTATTGCCTAATTCTGATTCTCTTTGGGGTTTTCATGGGCAGAGGAGGAAGAAGGTGGTAG GGCAAGAGAAGAGGGAAGCTCTTGAAAGAGAGGTTGCTAATCTTGAGAAAATGCTCAACCAAGAAGAGAAGACACATGAGGTTTTGGAGAAGTTGCATCA CAACAACAACAATGGTGATCATATTGTATCCGCCGGTATCCCTATCCCGAGTTTTCTCAATCCTAAGGCCAAGGAGTTGATATCAGAGTTGGTTACAACA GAGAGCGAGATAGCTCGACTTGAAGGAGAAATAAACGAGCTTCGAAATACCCTAAAACATGAGCAACAAATGGCTAAGGAGGCCACAAAACCATCATCAA GACAATGGAGAACCCACAACTTCCCACCTCCAACTCCAATCCATTTCCCTCCCCACAACAACTACAACAACAACCAGACAACTCCTCTAACCAACAAGCC ACAAGACAAGGTGGGGTTTGAGACCAAGGCACTTCACTTCATTAGCAAGGCCATCAAGGGGGACTATAGTCTCAACATGAACCGTCACCAATCCCCTATC GCGGCAGACAGGACGAGAAGCGGTACTACTACAGAAGGCGACGTGACACAATCATATCGTAATCGTCGCCAGCTTCGTGAAACCCTACCAACGGAGAAAG TGGAAAATTTTCACCAGCATTACCACCAGGGCAACCGGGTAGAGGCCCCGCGAAAGAGTGGGGTGTTGAACCTGAAGTCGCCTTCCCCTATGCGCGACTT CAGACACCCATCCCCGTGGCCTAGGGACCGTAACATAGACAACCAAACAACACCTGACCATCGATCCACATCCTTGCCAAAGGCTTTGTCCAACAAAATT TTGGCCGAGGACAACAATGTCCACCAAATCCAGCCCAACAAACTGTCTGAGAACATCATGAAGTGTCTCAACTTCATCTACATTAGGTTACTAAGGACAT CTAGGGCAATCGAGCTCGAGAGATCGGGTCCGGTTTCAAGGACATCCTTGAACTCCTCCCTAAGCTTCAGGGCCGACTCAGGGCTATTGAACGCCAAATC GACCAGCCTTTCATTGTACAAAGAGTCGAGGCAACGAGACCCATATGGCATTTTCGACGTTGAGGAGTCGATCCCTCGGGACATTGGTCCTTACAAGAAC TTGGTCGTCTTCAATTCGAGTTCCATGGACCCTAACTACATCTCCAGCTCTAGCTCCATGTCTCTCATCAAGAAGTTGAGGGTATTGATGAACAATCTAC AAAGTGTGGAATTGAGATTCTTGACCCAACAGCAGAAGCTTGCTTTCTGGATCAACATGTACAATGCTTGTATCATGCATGGATTTCTTCAATTTGGGGT GGCTCATAATTCAGATAAGTTGCTAGCACTGATGAATCGGGCAACACTCAATGTTGGTGGCAACACAATCAATGCGCAAGCAATTGAGCATTATATTCTA AGAAAAACATCTTCTCACATTAATAAGCATCAAAATAAAGACGAAAACAACGAGAGCAAGGAATCCGCTGTCCGAACACTGTATGGACTCGAAACAACTG ACCCAAATGTCACTTTCGCGCTATGTTGCGGGACTCGCTCCTCCCCCGCGGTAAGGGTATACACAGCTGAGGGAGTGACAACTGAGCTGGAGAGGTCGAA GCTAGAATACCTACAGGCTTCTGTTGTGGTTACTGGCACGAAGCGGATAGCAATGCCGGACCTCTTAGTGAGGAACCTGACGGATTTCGCGATGGACACA GACACGCTCGTCGAATGGGTATGCCACCAGCTTCCCACGTCGGGTTCCCTGAGGAAGTCGATCGTGGACTGCTTTCGAGGTGGACAGAGTAATAGTAACA GTGGGAAGTTGGCACCAGCCGCAACCGTTAGTGTGGAGAAGATACCTTACGATTTTGAGTTCCAATACTTGTTGGCTATATGA
AA sequence Show only first row Show all	>Lus10021450 pacid=23179233 polypeptide=Lus10021450 locus=Lus10021450.g ID=Lus10021450.BGIv1.0 annot-version=v1.0 MASLHHQHHHGNLLLPNSDSLWGFHGQRRKKVVGQEKREALEREVANLEKMLNQEEKTHEVLEKLHHNNNNGDHIVSAGIPIPSFLNPKAKELISELVTT ESEIARLEGEINELRNTLKHEQQMAKEATKPSSRQWRTHNFPPPTPIHFPPHNNYNNNQTTPLTNKPQDKVGFETKALHFISKAIKGDYSLNMNRHQSPI AADRTRSGTTTEGDVTQSYRNRRQLRETLPTEKVENFHQHYHQGNRVEAPRKSGVLNLKSPSPMRDFRHPSPWPRDRNIDNQTTPDHRSTSLPKALSNKI LAEDNNVHQIQPNKLSENIMKCLNFIYIRLLRTSRAIELERSGPVSRTSLNSSLSFRADSGLLNAKSTSLSLYKESRQRDPYGIFDVEESIPRDIGPYKN LVVFNSSSMDPNYISSSSSMSLIKKLRVLMNNLQSVELRFLTQQQKLAFWINMYNACIMHGFLQFGVAHNSDKLLALMNRATLNVGGNTINAQAIEHYIL RKTSSHINKHQNKDENNESKESAVRTLYGLETTDPNVTFALCCGTRSSPAVRVYTAEGVTTELERSKLEYLQASVVVTGTKRIAMPDLLVRNLTDFAMDT DTLVEWVCHQLPTSGSLRKSIVDCFRGGQSNSNSGKLAPAATVSVEKIPYDFEFQYLLAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60720			Protein of unknown function, D...		Lus10021450 [exp]	0	1
AT5G60720			Protein of unknown function, D...		Lus10016114 [exp]	1.4	0.9872
					Lus10040842 [exp]	1.7	0.9796
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008225 [exp]	3.5	0.9802
AT5G45290			RING/U-box superfamily protein...		Lus10035680 [exp]	3.7	0.9648
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10015265 [exp]	4.0	0.9771
AT2G20650			RING/U-box superfamily protein...		Lus10039848 [exp]	4.6	0.9679
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10012523 [exp]	5.5	0.9659
					Lus10043485 [exp]	5.9	0.9735
AT1G29890		RWA4	REDUCED WALL ACETYLATION 4, O-...		Lus10000367 [exp]	6.0	0.9728
AT4G35240			Protein of unknown function (D...		Lus10016004 [exp]	6.5	0.9544

Compare expression of checked genes

Lus10021450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.