Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57120 258 / 1e-84 Protein kinase superfamily protein (.1) AT2G33580 81 / 1e-17 Protein kinase superfamily protein (.1) AT1G51940 80 / 3e-17 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT1G21210 79 / 7e-17 WAK4 wall associated kinase 4 (.1) AT5G02290 78 / 1e-16 NAK Protein kinase superfamily protein (.1.2) AT1G21230 77 / 2e-16 WAK5 wall associated kinase 5 (.1) AT5G49760 77 / 5e-16 Leucine-rich repeat protein kinase family protein (.1) AT1G21245 72 / 7e-16 Protein kinase superfamily protein (.1) AT1G21250 74 / 2e-15 PRO25, WAK1 cell wall-associated kinase (.1) AT1G21240 74 / 2e-15 WAK3 wall associated kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016113 [exp] 394 / 2e-136 AT3G57120 447 / 8e-154 Protein kinase superfamily protein (.1) Lus10038716 [exp] 209 / 5e-65 AT3G57120 407 / 1e-138 Protein kinase superfamily protein (.1) Lus10027054 [exp] 120 / 4e-32 AT3G57120 213 / 2e-64 Protein kinase superfamily protein (.1) Lus10029720 [exp] 102 / 2e-25 AT3G57120 142 / 6e-38 Protein kinase superfamily protein (.1) Lus10011517 [exp] 100 / 2e-24 AT3G57120 182 / 2e-52 Protein kinase superfamily protein (.1) Lus10011518 [exp] 99 / 8e-24 AT3G57120 173 / 6e-49 Protein kinase superfamily protein (.1) Lus10042225 [exp] 86 / 1e-19 AT2G33580 209 / 5e-62 Protein kinase superfamily protein (.1) Lus10037586 [exp] 86 / 4e-19 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10006841 [exp] 84 / 2e-18 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G009600 [exp] 275 / 1e-91 AT3G57120 444 / 6e-154 Protein kinase superfamily protein (.1) Potri.008G037501 [exp] 227 / 8e-73 AT3G57120 411 / 3e-141 Protein kinase superfamily protein (.1) Potri.008G037401 [exp] 218 / 3e-69 AT3G57120 371 / 2e-125 Protein kinase superfamily protein (.1) Potri.010G224900 [exp] 214 / 7e-68 AT3G57120 414 / 2e-142 Protein kinase superfamily protein (.1) Potri.005G259600 [exp] 91 / 5e-21 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.001G190200 [exp] 85 / 6e-19 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128200 [exp] 81 / 1e-17 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.003G046450 [exp] 79 / 5e-17 AT5G49760 865 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G094700 [exp] 79 / 9e-17 AT4G29990 652 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.011G072841 [exp] 78 / 1e-16 AT1G07650 489 / 3e-165 Leucine-rich repeat transmembrane protein kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10021451 pacid=23179139 polypeptide=Lus10021451 locus=Lus10021451.g ID=Lus10021451.BGIv1.0 annot-version=v1.0 ATGAATCTTGTTCATAATCATTTCACCAGCAGTAGCGTCATCGTTATGGAGCCTTCTCTCCATGCTAAGATCTGCCACTTCGGTACTGCGCAGCTCTGCG GCGAAGTCGACGACGGAGTTGGAAAACCTAATTCCGAAATCTCGATTGTGCCAGAGGAGGAAGAAGGAGGAGGAAGATCGTCGCCGCAATTGACGAGATC GGACAGCGCAGGGATGCAATTCCAAGGCGTGAGAGGGTACATGTCGCCGGAGTTTCAGTCCACGGGGATCGCAACGCAGAAATCCGACGTGTACGCATTC GGAGTGGTGATTCTGGAGCTTTTGTCTGGGGAGGAGCCGATGAGGTATAGGTTCGACAATTCGAGAGGGGAATATGTCCGGACGACACTGATCGAGACTG CGGCGGTGGCGGTCTCCACCGCCGCCGGAGATGGGAGGTTGAGGAAGTGGATGGATAGGAGGCTGAAGGATTCGTTCCCAGTCGACGTGGCGGAGAAGCT TGTACGGATAGCGTTGGATTGCGTACACGTGGAACCGGATAAACGGCCGGGAATGGGACGCGTGGCGGGGAAGATTTCCAGGCTGTACATAGACTCGGAG ACGTGGAATGACAGCATGAGAATGCCTACCGACCAGATTTCCGTTTCGTTGGCGGCCAGATGA
AA sequence Show only first row Show all	>Lus10021451 pacid=23179139 polypeptide=Lus10021451 locus=Lus10021451.g ID=Lus10021451.BGIv1.0 annot-version=v1.0 MNLVHNHFTSSSVIVMEPSLHAKICHFGTAQLCGEVDDGVGKPNSEISIVPEEEEGGGRSSPQLTRSDSAGMQFQGVRGYMSPEFQSTGIATQKSDVYAF GVVILELLSGEEPMRYRFDNSRGEYVRTTLIETAAVAVSTAAGDGRLRKWMDRRLKDSFPVDVAEKLVRIALDCVHVEPDKRPGMGRVAGKISRLYIDSE TWNDSMRMPTDQISVSLAAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57120			Protein kinase superfamily pro...		Lus10021451 [exp]	0	1
AT2G45590			Protein kinase superfamily pro...		Lus10041395 [exp]	1.4	0.8703
AT3G43720			Bifunctional inhibitor/lipid-t...		Lus10008401 [exp]	3.5	0.8591
AT5G67350			unknown protein		Lus10019301 [exp]	6.0	0.8448
AT3G25130			unknown protein		Lus10022768 [exp]	6.7	0.8407
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10024657 [exp]	7.6	0.8639
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10027885 [exp]	7.9	0.8629
AT1G53280		AtDJ1B	DJ-1 homolog B, Class I glutam...		Lus10009525 [exp]	10.2	0.8434
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Lus10007575 [exp]	13.0	0.8464
AT1G80870			Protein kinase superfamily pro...		Lus10026069 [exp]	13.5	0.8158
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10032290 [exp]	13.7	0.8447

Compare expression of checked genes

Lus10021451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.