Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27990 268 / 1e-83 HD PNF, BLH8 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) AT5G02030 210 / 1e-61 HD PNY, BLR, BLH9, RPL, HB-6, VAN, LSN VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) AT2G27220 177 / 1e-50 HD BLH5 BEL1-like homeodomain 5 (.1.2) AT4G34610 178 / 7e-50 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT1G19700 176 / 4e-49 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT2G16400 175 / 4e-49 HD BLH7 BEL1-like homeodomain 7 (.1) AT4G36870 178 / 1e-48 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT2G23760 173 / 1e-47 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT2G35940 170 / 3e-46 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT1G75410 162 / 6e-44 HD BLH3 BEL1-like homeodomain 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016110 [exp] 790 / 0 AT2G27990 282 / 1e-88 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Lus10022599 [exp] 224 / 2e-66 AT5G02030 339 / 7e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10021498 [exp] 221 / 3e-65 AT5G02030 339 / 6e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10040256 [exp] 186 / 4e-54 AT2G27990 204 / 3e-60 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Lus10004688 [exp] 185 / 1e-53 AT5G02030 209 / 9e-62 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10000184 [exp] 182 / 2e-50 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10017481 [exp] 181 / 4e-50 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2) Lus10028802 [exp] 180 / 9e-50 AT4G34610 447 / 1e-150 BEL1-like homeodomain 6 (.1.2) Lus10013579 [exp] 177 / 1e-49 AT2G35940 427 / 1e-142 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G213300 [exp] 293 / 2e-90 AT2G27990 253 / 3e-74 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Potri.009G009800 [exp] 290 / 1e-89 AT2G27990 280 / 5e-84 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Potri.009G009900 [exp] 259 / 6e-78 AT2G27990 262 / 2e-77 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Potri.010G197300 [exp] 217 / 4e-65 AT5G02030 241 / 4e-73 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Potri.008G061000 [exp] 212 / 3e-63 AT5G02030 235 / 9e-71 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Potri.005G232000 [exp] 181 / 1e-51 AT1G75430 308 / 8e-103 BEL1-like homeodomain 11 (.1) Potri.001G216600 [exp] 185 / 2e-51 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.009G017400 [exp] 183 / 9e-51 AT2G35940 310 / 4e-95 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.005G129500 [exp] 184 / 2e-50 AT4G36870 449 / 1e-146 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Potri.001G100800 [exp] 181 / 2e-50 AT5G41410 440 / 4e-147 BELL 1, POX (plant homeobox) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07526 [flax] [poplar] POX Associated with HOX CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10021452 pacid=23179232 polypeptide=Lus10021452 locus=Lus10021452.g ID=Lus10021452.BGIv1.0 annot-version=v1.0 ATGGCCGACGACGATTCATCGCTGCATTACTTCCCGAACCCGAACCGGAACCCACCACCCGACATCCGAAGAGTCACCAACTTGTCCGAATTCGTCTCCT CCTCGAATGCTTTCGAATTCGGCCATACTCGTCCCACTTCATTTGATGGCTACGACTTGACGGCTTCCAAGCTTCATCATCATCACCAACCATTTAATAT TGAGGGTTATCAGGATTTGATCGGTTTCCCTACAGCTCATGGTGGTCAGGAAATGTTGACCAATGCGAGACGACGAAATGAGGGTTTGTCCTTGTCTCTC GCCTCGAATAATCCTCGTCGCGAACTTATTCGGACGACGACAAGTTGTAGTGGTAATGGACCACTTGGTCCGTTCACAGGGTACGCGACAATATTGAAGA ATTCAAGGTACTTGAGGCCGGCTCAGAACCTAATGGAGCAATGGTGCGGCACCACCACTGTCATGAGCTCGGCCACATTTCATAGCTCGAACGAAGTACT AGCCAACTTTGTCGCTGACTGTAATGGTGGTGGATGCACTAGTTCTTCTCGTGGTGTAACGAATTACCACGAGATGAAAGCGAGGCTTTCGTACCTGCTA GAAGAGGTGTGCAAGAGGTACAAGGTGTACAACCAGCAAATCCAGATGGTGGTATCGTCGTTTGAGACGGTGGCTGGGCTCGGATCATCGACGCCCTACG TATCCTTGGCGTTCAAGTCGATGTCTAGGAAGTTCAAGTCGATGAAGCAAGTGATCTTAGACCAGCTGAGGCATGTGACCAAGGTGCTTGGTGATGAGTT GGTGGGCCGGCAGATTGTTGGGTCGTCGAATTTAGACTTCCTCCATGAAGCCCATCAGCATGTGTATAGGTCCCAGAGAGGCCTGCCTGAAGGAGCCGTT GCTGTTCTTCGTGGTTGGCTCTTTGACCATTTTCTTCACCCGTACCCTACGGATGTTGATAAGCACCTCTTGGCTACTCAAACCGGGCTGACTCGAAACC AGGTATCAAATTGGTTCATAAACGCCAGAGTGAGAATCTGGAAGCCAATGGTGGAGGAGATACACAAGCTCGAGAGCCACAACCTCGTTGACCAACCTGG TCCGAGTAATTCGACAGTGGAACACAACTGCCACGGGTTCGGCCCTTCCACCTCGTCAATTGGTCACGAACAAGCTGGTCAGCACCAGGGGAAGAGGTCT AGAGTTGAGTTCATTCAATTCCCAATGAACAATGGCAGTACTATTGGGAACTCAGTGTCGTTGACCTTGGGACTCAGACATGGCTTTGCGGAGAACGTAA GTCAACATCAGCATCAAAGGTTGCAAGAGCATGAAGATCGGCTTATGAGGGAGTTTGGTGGTGGATATGGTGGAATGGTTCATGATTTTGGTGGTTGA
AA sequence Show only first row Show all	>Lus10021452 pacid=23179232 polypeptide=Lus10021452 locus=Lus10021452.g ID=Lus10021452.BGIv1.0 annot-version=v1.0 MADDDSSLHYFPNPNRNPPPDIRRVTNLSEFVSSSNAFEFGHTRPTSFDGYDLTASKLHHHHQPFNIEGYQDLIGFPTAHGGQEMLTNARRRNEGLSLSL ASNNPRRELIRTTTSCSGNGPLGPFTGYATILKNSRYLRPAQNLMEQWCGTTTVMSSATFHSSNEVLANFVADCNGGGCTSSSRGVTNYHEMKARLSYLL EEVCKRYKVYNQQIQMVVSSFETVAGLGSSTPYVSLAFKSMSRKFKSMKQVILDQLRHVTKVLGDELVGRQIVGSSNLDFLHEAHQHVYRSQRGLPEGAV AVLRGWLFDHFLHPYPTDVDKHLLATQTGLTRNQVSNWFINARVRIWKPMVEEIHKLESHNLVDQPGPSNSTVEHNCHGFGPSTSSIGHEQAGQHQGKRS RVEFIQFPMNNGSTIGNSVSLTLGLRHGFAENVSQHQHQRLQEHEDRLMREFGGGYGGMVHDFGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10021452 [exp]	0	1
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10016110 [exp]	1.0	0.9702
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10018655 [exp]	3.5	0.9399
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10007719 [exp]	3.9	0.9297
AT5G15080			Protein kinase superfamily pro...		Lus10030796 [exp]	4.5	0.9077
AT4G39260		ATGRP8, CCR1, G...	glycine-rich RNA-binding prote...		Lus10001242 [exp]	4.7	0.9040
AT2G39870			unknown protein		Lus10040247 [exp]	7.5	0.9145
AT2G18500	OFP	ATOFP7, OFP7	ARABIDOPSIS THALIANA OVATE FAM...		Lus10041730 [exp]	8.0	0.9254
AT2G38370			Plant protein of unknown funct...		Lus10025249 [exp]	8.1	0.9184
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Lus10041746 [exp]	8.4	0.9009
AT2G25270			unknown protein		Lus10001945 [exp]	8.5	0.9116

Compare expression of checked genes

Lus10021452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.