Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08060 152 / 1e-36 MOM1, MOM MORPHEUS MOLECULE 1, MORPHEUS MOLECULE, MAINTENANCE OF METHYLATION, ATP-dependent helicase family protein (.1.2) AT2G28240 46 / 0.0002 ATP-dependent helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016103 [exp] 2353 / 0 AT1G08060 150 / 3e-36 MORPHEUS MOLECULE 1, MORPHEUS MOLECULE, MAINTENANCE OF METHYLATION, ATP-dependent helicase family protein (.1.2) Lus10041322 [exp] 350 / 5e-98 AT1G08060 440 / 4e-125 MORPHEUS MOLECULE 1, MORPHEUS MOLECULE, MAINTENANCE OF METHYLATION, ATP-dependent helicase family protein (.1.2) Lus10037390 [exp] 342 / 2e-95 AT1G08060 455 / 7e-130 MORPHEUS MOLECULE 1, MORPHEUS MOLECULE, MAINTENANCE OF METHYLATION, ATP-dependent helicase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G010133 [exp] 257 / 3e-69 AT1G08060 166 / 5e-41 MORPHEUS MOLECULE 1, MORPHEUS MOLECULE, MAINTENANCE OF METHYLATION, ATP-dependent helicase family protein (.1.2) Potri.013G006000 [exp] 240 / 1e-63 AT1G08060 474 / 6e-136 MORPHEUS MOLECULE 1, MORPHEUS MOLECULE, MAINTENANCE OF METHYLATION, ATP-dependent helicase family protein (.1.2) Potri.004G212700 [exp] 187 / 2e-47 AT1G08060 464 / 2e-133 MORPHEUS MOLECULE 1, MORPHEUS MOLECULE, MAINTENANCE OF METHYLATION, ATP-dependent helicase family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021457 pacid=23179205 polypeptide=Lus10021457 locus=Lus10021457.g ID=Lus10021457.BGIv1.0 annot-version=v1.0 ATGGCAGTAGAAACTAGGGCTAGCAGTGCCTCTAAAGTAGACGAAAGCACAAATTCGAGAACTCTGAGGTCCTCGTCGCGGCTAGCTAGGGAGAAGTTGT TGAGGAGTGATACAAAGGCTAGCCCTTTGAATGCTCGGAATTCGGTTAAGAGGAAACACAAGACCATTGTAAGGAAGCCTGAGAAGAGTAAGGAGGAATC TGTACCGGGTTATTCGAGGTTGAAGAAGCCAAGGATGGCAAAATTGACTACCAAAACCAAAGAGGTGAACAACAGTGAAGTGGAGTTGTCCAAGGGGAAG ACGAGATATAATGCTCGTTCGTACAAAGCACTTTTCACGAAGAAGAAGAAGAAGAAGAAGCAGAGAACTAATGTAGAAGCTGATTCTGTAAGTCCAACAA CTTCAAAGACGGTTGATGGTCAGGCTAGCAAAGCTTCTGCGACTGATGATTTTGCACAATCGCAGCTTGGGGATGACATAGTGCTCGAGGCTGCATCTGA TAATGAGATTGTTTCGGTGAGCATTGACAAATCCCTGGTGTCGAAAAGAAAAAGAATCGAAGCCGGTTTAGTTGATGAGACTGCATTGGTGTCAAGTAAA GATGCCGATATCTCTCCCACTGATGCTGCTGCTGCTGCAGTGGAAGATCAATCTCGAGTGAAGCGTCTTTCAAATGATTTTGCTGGAGGCCTTAAGAGGC AGAGGGTTAATGATGAAGGAAAACAGCAAGAGCTTTGCTATTTGAACAACGAGTCAGATTGGGACAATGCCTATCACAAGTCGAAGGTAGATGGGAGTAA TCCGTCAGAAGTTGAAGTAATTATTATCAACAAGTCAATTGAACCTGATAGGCTGCAGAATTCACAGAACAATTTACATTGTGATCTGAAGCCGAAAATA GCATTGCTTTGTGAAGTTCTAAGATTCCCGGATGATGTCAGATGTATAGTTGTAAGCTTTCTCGACTATGTAGTGAACAATCAATATCATCAACTGGCTT CAAAGCGAGAATCTGGATTACAGGCTTTTCAGATTGCTTTGTGTTGGACTGCTGCTTCTTTGCTGAAGTACAAGATTGACCATATGGAATCTCTGGGACT TGCTAAGGAGCGATTAAACTTTGGATGCAAGAAAGAACATGCTGACTTTGAGTATTCGATGTTACGATGTTTGAAGAAATTATTTCTATCCCATCATCAG CTAAGTAAATGTGTTTCTGACGACCAGTTGCATGCTAGTCCTTCCAACAGGTCAATTTCAAGCCCTCAAAAAAACGGGGATGGAACTCAAATCCAGCAAC CACATGAATTGGCACATCAAGATTTTTCTAGAAGCATCAAAGACATCCACAAGAAGTGTGATAAGCAGTTTAGAAAACTGGTGGAGCAACAAGCACAGCA GAGAGAGAACTTGCTTAAAAAGTACGAGGATCAAAAGGCTCAGCTTGTGAAGAAGCAGGAAACAGAGGCAGCTGTCATTCGTCTTTACAGCCCTGATTCA ATGAGACCAGACAAGCTTGAGTTCATGGAAGCTGAATATGCAGAGAAATTCGAGAAACTTGAACATGAAAGGGTCACAGAACTTAAAAATCTCGAGGCAA TGCAGTCTGCATCAAGGAAAAAATTGGAAGAGAATAAACTGAAATGGGTTGAAGGATTGGAAACCTGGGCGAAGGAAGAATTAATGCCTAGGCTGCCTCG AAAAGATACTGGGCAGACTTCAGGAACTGGTGTTTCTTCTGATGTTCATCCTACGCAAGTTACTTGTCAGGCAAGTTTAACTGACAATGGAGAAGAAGAA ACAACCCAAATGGTGAAGTCTTCTGCTGAAGTGATTCATGAAATACCATCTACTACGGTGCATGTTGAATCAACACAGGTTGAGGTTACTTCGGAACCAT TGGCACCTACTGGTGAATCTGCAAGACCTCTGTCAGATCAACAAGTCAAGGATAGTTCTCTTCAAAGTCGAGATGAGGAACCTGGTTCCACAATACCTGA AACAGCTGCCAATACTGGCTTTGGCTTAGTAGATAATAATGCTGATGGAGAGATTGAAGAAGGCGAAATTTCCAATGCTGAGGAAGGAGGCGGTGAGATT CTATCTCCTGAATCTGACAGACCTGTGACAGACCAGCTTGTGAAGTATAGTTCTCTTCAAAATCAAGACACCGGTACAGATAAAGTTGGATTAGGGGTTC CAGACTTACCACTTGGAGTTGACGCTGGTCTTCAGGGTGAACCGGTTTCTGCAATACCTGAAACAGCTACCACTACGACTACTTGCTTAGTAGATAATAA TGCTGACGGAGAGATTGAAGAAGGTGAAATTTCTGGTGCTGAGGAAGGAGGCGGTGAGATTTTATCTGCTGAATCTGAAAGACCCGTGACAGACCAACAA ATGAAGGATAGTTCTCTTCGAAGTCAAGACACCGGTACAGAGAATGTTGGATTAGGGGTTGAAGCTGGTCCTGAAGCTGATAAATTGGACGATCAGAATG ATGGAAGCACAAGTACAGAGAATGTTGGATTAGAAGTACCGGATCTGTGTCCCGAAGCTGATAAATTAGACGATCAGAATGATGGAAGCACCGAACAGGA TGTAGCAGCAACATCTATCCCTAGTGGAAAAGACAGTAGCGAAGTACTTTCTGTGACAGATTCACCTTTGATACAACCTGAAGCCTCCATAACAGGAGTC TCTTCTAGTAGAATAGATCAGCAGGATCCAGGGAGGATTTTTGCAGGTGTGTCTAATGTAAGCACTGATCTGGCAGATGGAAGCAGTCATCAGGAGGGAA CGGTTACCGGAGTTCACGAGGAAGCAACTGCGGAAGTTGTGGGTGTTGGGGAGAAAAATCTAGCCTCTGCTGAAGTATTAGAAGATCATAATGATGGAAT CCTAACTCACGATCCGAAAGCTCCTGTTACCAACCAAAGTGATCAATCCGGACAAATTGTTCACTCGATTTCAACTCAGGTGCAGGATGGTGTAGTTTCT TGTGTCTCGGGCTCGGACACAAATACAGAAGTAGTAGATGTGGCAGACTTATGTATAGAGAACAATGGAACCAGAGTTGGTCAAGAGAGTCGTTCTTCTG AAGATACTGAAGTGCATCATCAGGATGATCAATCCCAACAAACTGTTCAAACGAATTCAGCTCCAGTATCTACTGGAGTTGGTCAAGAGTGTGGATCTTC TGAAGACACGGCAGTGCATCACCAGGATGCAACCACGATTCCACCAGTGGCCGAGACAGCCACTACTGTTAGAATGGACATGGGGAACTCTTGTACAGAG AACAACATATCTTCTCAGAATCTGGGAGCTTCTACTGCCAGGAGAGATGATGGTTCAGGAGAAAGTTCTCGGACAAATTCGACCTCAATGCAGCCAAAAG CTGCGGTCTCTGCACAAGCCAGCTCATCGCTCCCGAATCAGCCTGTTCAAGATGAACCACGTCGACAGCTGCCTGCATCTACTAGAGCAAATGTTTCGGA AACAGTAACTGCACCTTCTACCTCAGCAAACCGTGCCCTCCTTCCACAACCTGCGCCTGTTTACCGAATGCCTCCCCCTTTGGGGCCCGATCCTCTCCAG AACGAATTGGATAGAGTATCCAGAGATGTAGATCAGATAGTCAATGTATATGAAAAGAAGAAGCTGCAGTTGAGATTCGACTGCGAAAAGGAAATCGAGG AAGTAGTTGCACAGATACGTCGGAAGTACGAAGCTATAGGCAAGGAGTCAGAAACTGAATTCGCGCGAAACAAGTCGGAACTGGATGCAAAGCACCATAA AATCCTGATGAACAAGCTCCTGGCTGATGTGTTCAGGTCCAAATGCGTGGACAGTCGAGCAAACAAATCTGCTGGAGTTCTGCAAGATGCTGCTGCTAGT TTTATGCAGCAATTCCGGAATCTATCTTCGCAGCCTACGCAACCATACACAGGACAGCGATTCTCAACTGCTGCTTCTCGGCCTTTGCAGCCTCCACCGA ATGGCTTAGCAGCGAATCATCAACCGACCGGTTCGCCTCATCCATCGGTCTCTCGAGCACATCCTGTCGCTCATCGCTTCCCAACACCAACTCCTATCCT TCAATCTTCAAGGCCACTCAACATCAGCACCCACACCCCTACTACAGCAAGCAGCAATCTCCATCAATCCGGTAGCCAATTTCGAGCGCCTGCTCCGCAC ATGCAAGCCGTTCGAGCTATGACATCACATGGATCGCAAAGCCAACTACGTCCTCATAGTGTTGTCCGTCCCTCTACTGTAGTCTCCATAACTGCATCTT CGTCAGTTACTCCTGCTTCGGTCAATGCACCTGCAATTGTGCCTCCTGAAGTTCGGCCAAATGGTGCGCAAGGGAACTCCACGCAGCGAAACGAGGTCGT TTGTTTGTCTGATGATGATTGA
AA sequence Show only first row Show all	>Lus10021457 pacid=23179205 polypeptide=Lus10021457 locus=Lus10021457.g ID=Lus10021457.BGIv1.0 annot-version=v1.0 MAVETRASSASKVDESTNSRTLRSSSRLAREKLLRSDTKASPLNARNSVKRKHKTIVRKPEKSKEESVPGYSRLKKPRMAKLTTKTKEVNNSEVELSKGK TRYNARSYKALFTKKKKKKKQRTNVEADSVSPTTSKTVDGQASKASATDDFAQSQLGDDIVLEAASDNEIVSVSIDKSLVSKRKRIEAGLVDETALVSSK DADISPTDAAAAAVEDQSRVKRLSNDFAGGLKRQRVNDEGKQQELCYLNNESDWDNAYHKSKVDGSNPSEVEVIIINKSIEPDRLQNSQNNLHCDLKPKI ALLCEVLRFPDDVRCIVVSFLDYVVNNQYHQLASKRESGLQAFQIALCWTAASLLKYKIDHMESLGLAKERLNFGCKKEHADFEYSMLRCLKKLFLSHHQ LSKCVSDDQLHASPSNRSISSPQKNGDGTQIQQPHELAHQDFSRSIKDIHKKCDKQFRKLVEQQAQQRENLLKKYEDQKAQLVKKQETEAAVIRLYSPDS MRPDKLEFMEAEYAEKFEKLEHERVTELKNLEAMQSASRKKLEENKLKWVEGLETWAKEELMPRLPRKDTGQTSGTGVSSDVHPTQVTCQASLTDNGEEE TTQMVKSSAEVIHEIPSTTVHVESTQVEVTSEPLAPTGESARPLSDQQVKDSSLQSRDEEPGSTIPETAANTGFGLVDNNADGEIEEGEISNAEEGGGEI LSPESDRPVTDQLVKYSSLQNQDTGTDKVGLGVPDLPLGVDAGLQGEPVSAIPETATTTTTCLVDNNADGEIEEGEISGAEEGGGEILSAESERPVTDQQ MKDSSLRSQDTGTENVGLGVEAGPEADKLDDQNDGSTSTENVGLEVPDLCPEADKLDDQNDGSTEQDVAATSIPSGKDSSEVLSVTDSPLIQPEASITGV SSSRIDQQDPGRIFAGVSNVSTDLADGSSHQEGTVTGVHEEATAEVVGVGEKNLASAEVLEDHNDGILTHDPKAPVTNQSDQSGQIVHSISTQVQDGVVS CVSGSDTNTEVVDVADLCIENNGTRVGQESRSSEDTEVHHQDDQSQQTVQTNSAPVSTGVGQECGSSEDTAVHHQDATTIPPVAETATTVRMDMGNSCTE NNISSQNLGASTARRDDGSGESSRTNSTSMQPKAAVSAQASSSLPNQPVQDEPRRQLPASTRANVSETVTAPSTSANRALLPQPAPVYRMPPPLGPDPLQ NELDRVSRDVDQIVNVYEKKKLQLRFDCEKEIEEVVAQIRRKYEAIGKESETEFARNKSELDAKHHKILMNKLLADVFRSKCVDSRANKSAGVLQDAAAS FMQQFRNLSSQPTQPYTGQRFSTAASRPLQPPPNGLAANHQPTGSPHPSVSRAHPVAHRFPTPTPILQSSRPLNISTHTPTTASSNLHQSGSQFRAPAPH MQAVRAMTSHGSQSQLRPHSVVRPSTVVSITASSSVTPASVNAPAIVPPEVRPNGAQGNSTQRNEVVCLSDDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10021457 [exp]	0	1
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10003701 [exp]	2.2	0.9397
AT3G10650		AtNUP1	unknown protein		Lus10043447 [exp]	2.8	0.9198
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Lus10041301 [exp]	6.7	0.8921
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025704 [exp]	7.7	0.9009
AT3G21060		RBL	RbBP5 LIKE, Transducin/WD40 re...		Lus10025693 [exp]	8.5	0.8846
AT3G10650		AtNUP1	unknown protein		Lus10008959 [exp]	8.8	0.8744
AT3G51120			DNA binding;zinc ion binding;n...		Lus10014271 [exp]	9.5	0.8733
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10021265 [exp]	11.3	0.8926
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Lus10005032 [exp]	12.1	0.8768
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10033983 [exp]	14.1	0.8751

Compare expression of checked genes

Lus10021457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.