Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60710 707 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G38970 638 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G54780 613 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) AT1G08050 558 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G49665 209 / 1e-57 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G22680 179 / 1e-47 WAVH1 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G65683 173 / 2e-45 WAVH2 WAV3 homolog 2, Zinc finger (C3HC4-type RING finger) family protein (.1) AT4G37890 118 / 2e-27 EDA40 embryo sac development arrest 40, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) AT1G19110 44 / 0.0004 inter-alpha-trypsin inhibitor heavy chain-related (.1) AT3G28620 43 / 0.0004 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016102 [exp] 1159 / 0 AT5G60710 764 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10041321 [exp] 826 / 0 AT5G60710 730 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10023527 [exp] 662 / 0 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040413 [exp] 634 / 0 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10037391 [exp] 207 / 4e-61 AT5G60710 181 / 6e-52 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10037392 [exp] 189 / 1e-55 AT5G60710 157 / 7e-45 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10003485 [exp] 167 / 3e-43 AT2G22680 522 / 9e-177 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10042930 [exp] 159 / 7e-41 AT5G49665 397 / 7e-129 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10028224 [exp] 142 / 4e-37 AT5G49665 286 / 5e-91 Zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G010350 [exp] 785 / 0 AT5G60710 763 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G223766 [exp] 696 / 0 AT2G38970 892 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G038450 [exp] 689 / 0 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G082150 [exp] 492 / 1e-165 AT2G38970 466 / 4e-156 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.003G148400 [exp] 492 / 3e-165 AT2G38970 475 / 3e-159 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.002G107902 [exp] 190 / 7e-51 AT5G49665 675 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.016G001300 [exp] 155 / 4e-40 AT5G60710 156 / 1e-40 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G000900 [exp] 146 / 6e-37 AT3G54780 147 / 1e-37 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) Potri.001G166800 [exp] 49 / 2e-05 AT1G19110 753 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.003G068000 [exp] 49 / 2e-05 AT1G19110 734 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [flax] [poplar] vWA-like PF00092 [flax] [poplar] VWA von Willebrand factor type A domain CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10021458 pacid=23179141 polypeptide=Lus10021458 locus=Lus10021458.g ID=Lus10021458.BGIv1.0 annot-version=v1.0 ATGGCGCTGGGTTTCACCACTTGTCTCTACGCTCCTCGAACTACAGAGCGGCAAGATGGAGAAGACACCGTCACCGGCGACGAGAAGGACCGCCACTCGT CCGCCGCCAAGAGCTCCTCCTCATCTCACGCTCGTCTGCCGCCGTCGTCTTCCTCCTCTGGCCACCGCCTCTCCAAATCCGGACCTCTCTCTAAGTCTGG AAAGAGGACATGTGCAATATGCTTGACGAATATGAAGGCAGGACATGGCCATGCAATCTTTACTGCAGAATGCTCCCACTCTTTCCATTTCCACTGCATC ACATCGAATGTCAAGCATGGCAACCAAATCTGCCCGGTTTGCCGGGCGAAATGGAAAGAGAGGACATGTGCAATATGCTTGACGAATATGAAGGCAGGAC ATGGCCATGCAATCTTCACTGCAGAATGCTCGCACTCTCTCCATTTCCACTGCATCACATCGAATGTCAAGCATGGGAACCAAATCTGCCCGGTTTGCCG GGCCAAATGGAAAGAGGTTCCTTTCCAGTCTCCTCGGTCCGAGAATCCCGTTAGGAGGATAAGATCCAACAATGTAGGATCGCAGCCGGATAATGAGTGG ATGAACATCGTAAGACGAGTCCCTCCTCCTCGTCTCGATACTTCTTCTATCTCGTCTCTTCATCACGAGCCAGCAGTTTTCGATGACGATGAAGCCTTAG CTCTTGATCAAGAAAGAAGTGCTGAAAATGAAGAAAATGTTGGAACAAGAAGATTCATGGAGGTGAAAACATATACTGAATTTCCAGCAGTATCTCGATA CACATCCCACAGCCATTTCTCCGTGTTGATTCATCTCAAGGCTCCACCAAAGGTGTCGGGAAGTTCTTCTCGCGCTCCAATCGATCTTATCACAGTACTG GATACCAGTGGGAGCATGGCCGGTACGAAGATTGCATTATTGAAACGAGCGATGGGGTTCGTGATACAGAATCTCGCTCCTTCCGATAGGCTTTCGGTGG TTACATTCTCATCATCTGCTCGTCGTGTTTTTCCTCTTCGTTGTATGTCTGAATCCGGAAAGAATGAGGCTTTACAGGCTGTTAATTCATTGCTCTCCAA TGGCGGAACGAATATAGCCGAGGGATTAAGGAAAGGTGCGAAGGTGTTGCTGGACCGTAAGTGGAAGAATCCGGTTTGTAGTATTATTCTGCTCTCTGAT GGTCAGGATACTTATACAGTAGGGAATAGAGTACAAACAGACTATAAACTACTCCTTCCTGCTTCAATCCATTGTAATGCTGGATCGGATTTGCGGATTC CAGTACATACATTTGGATTCGGTGTGGATCACGATGCAGCAGCCATGCATTCGGTTGCTGAGGCATCCGGTGGAACCTTTTCGTTCATAGAGGCCGAGAG CTCGATTCAGGATGCATTTGCTCAGTGCATTGGTGGACTGTTGAGTGTTGTAGCACAGGAGGTGCTAGTCGAAATCGAGTGTGTTAACCCGAGTTTGCGA ATCCACTCGGTAAATGCAGGTAGTTACAGAACCAGAACATCAGATGATGGAAAAAACGGGTCAGTTGAGATTGGAGATCTGTATGCTGAAGAAGAAAGGG ATGTTTTAGTCACGATGGATATACCGGTTGATGAATCGAAGGATTCGATGTCGTTACTGAATGTGAAATGCACCTACGGAGATCCCATTACCAAAAAGAC GGTGACTTTGGAAGGATCCGGTCCGGTAACCATCCAGAGGCCTGAAGATGTTGGCCTGCAGGGAGTATCGATCGAAGTCGATAGACAGAGAAACAGGCTA CGTGCAGCTGAGGCCATGGCGGAAGCTAGACTCGCAGCAGAAAACAGCGAGCTGTCTCGAGCTGTCGAAGTACTCGAGAAGTGTCGTAAGGCTTTATCCG AGACTGTATCTGTCCGAGCTGGTGACAGATTGTGCAATGTACTATGCTCCGAGCTGAGGGAGATGCAGGAAAGGATGGCTACTCGAAGAGTTTACGAGAC TTCAGGGAGAGCCTACGTGCTGTCGGGTATGAGCTCACACTTGCTACAAAGAGCAACTGCAAGGGGCGATTCCACGGACTCTTACCAGACTCCGTCGATG GTTGACATGGTGACCCGGTCTCAGACCATGATTCTGGGGAACCCATCGTCGACTCGAGGGAAGCTGAGGCCGGCCTTTTCGTTCCCAGCTCGAACCTTGG AGCCAAGGTAA
AA sequence Show only first row Show all	>Lus10021458 pacid=23179141 polypeptide=Lus10021458 locus=Lus10021458.g ID=Lus10021458.BGIv1.0 annot-version=v1.0 MALGFTTCLYAPRTTERQDGEDTVTGDEKDRHSSAAKSSSSSHARLPPSSSSSGHRLSKSGPLSKSGKRTCAICLTNMKAGHGHAIFTAECSHSFHFHCI TSNVKHGNQICPVCRAKWKERTCAICLTNMKAGHGHAIFTAECSHSLHFHCITSNVKHGNQICPVCRAKWKEVPFQSPRSENPVRRIRSNNVGSQPDNEW MNIVRRVPPPRLDTSSISSLHHEPAVFDDDEALALDQERSAENEENVGTRRFMEVKTYTEFPAVSRYTSHSHFSVLIHLKAPPKVSGSSSRAPIDLITVL DTSGSMAGTKIALLKRAMGFVIQNLAPSDRLSVVTFSSSARRVFPLRCMSESGKNEALQAVNSLLSNGGTNIAEGLRKGAKVLLDRKWKNPVCSIILLSD GQDTYTVGNRVQTDYKLLLPASIHCNAGSDLRIPVHTFGFGVDHDAAAMHSVAEASGGTFSFIEAESSIQDAFAQCIGGLLSVVAQEVLVEIECVNPSLR IHSVNAGSYRTRTSDDGKNGSVEIGDLYAEEERDVLVTMDIPVDESKDSMSLLNVKCTYGDPITKKTVTLEGSGPVTIQRPEDVGLQGVSIEVDRQRNRL RAAEAMAEARLAAENSELSRAVEVLEKCRKALSETVSVRAGDRLCNVLCSELREMQERMATRRVYETSGRAYVLSGMSSHLLQRATARGDSTDSYQTPSM VDMVTRSQTMILGNPSSTRGKLRPAFSFPARTLEPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10021458 [exp]	0	1
AT4G26180			Mitochondrial substrate carrie...		Lus10008572 [exp]	2.2	0.7587
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10016102 [exp]	2.4	0.7263
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Lus10033913 [exp]	21.8	0.7169
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10034454 [exp]	22.4	0.7573
AT5G01830			ARM repeat superfamily protein...		Lus10025244 [exp]	36.7	0.7162
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023080 [exp]	42.4	0.6952
AT3G27880			Protein of unknown function (D...		Lus10014541 [exp]	43.4	0.7015
AT1G77580			Plant protein of unknown funct...		Lus10012712 [exp]	49.2	0.6887
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10019996 [exp]	77.7	0.6610
AT3G09010			Protein kinase superfamily pro...		Lus10002494 [exp]	88.4	0.6684

Compare expression of checked genes

Lus10021458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.