Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26750 373 / 5e-124 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016099 [exp] 841 / 0 AT3G26750 405 / 5e-137 unknown protein Lus10016097 [exp] 181 / 3e-50 AT2G28260 689 / 0.0 cyclic nucleotide-gated channel 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G019733 [exp] 451 / 7e-154 AT3G26750 385 / 9e-128 unknown protein Potri.007G019800 [exp] 446 / 1e-151 AT3G26750 388 / 5e-129 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0552 [flax] [poplar] Hect PF09814 [flax] [poplar] HECT_2 HECT-like Ubiquitin-conjugating enzyme (E2)-binding
Representative CDS sequence Show only first row Show all	>Lus10021459 pacid=23179211 polypeptide=Lus10021459 locus=Lus10021459.g ID=Lus10021459.BGIv1.0 annot-version=v1.0 ATGAACTCCGAAAACCCTAAAAAATGGCGATTTACATGGGAAGCTCAATCCCACGTTCCGAATCTGAAGCTATTCATCTTCAATCCAGGCTCCAGACCTT CATCAGATTGCAGCAACCTCAATGTTCACCTGAAGCTCTCTCAAAGCCACGTGCTCGTGAGCTGGATCGAGGAGGCTTCCGCCGTCGGCGGGGAGAATTT CTCACTCAAGGTTCCGATTCCAAATGTCTTGATCGACTCGGAGATTCCTGTCAGCTTCAGAGCTTTGGACGATCACATCGAAGTTAAAGTGGTGCTTCTC CTTCCCGTCGATCATCCTATCCTGTCCAGCTTCGAATCTTCGCTTGATTCGATCCCGCTCGCAATGAATTCTGATTTGAAGAGATTATCATCGATGGAAG AAGGAGTGAAGTTCTACTGTAGGATGTGTTCAACTCAATTGACGAAAAGTGCCATTAGGAAATTTGAGGTAATGCCGTCTGACAATTGGAGAGAAGTGGC TGATAACTGGTTTGGAGGTTGCTGTTGTTCATTTGGAGGTGTCGGCGAGGAGTTAGTGAATACTTTTGCTGATGCCTATGAATGTAAGAAAGGTCTGTGC TTGTTAAGCTCTCCAGCTGTTAGTCTGTGCAAGGATGATATCATTGGCCGTGAATCCAGCGATTCTGATGTGGCCAAGCTGTGTGAGCCTGAAGAGATTC CAGTTTCTGAAACTTTTCATGGTCGTAAGAAAGATGAGCATCAAAATGGACAGGTAAATTCGAGGGATGATGGTGAAACTGTGAAATGTGAAGATCTTGA GGGCAAGAATCGATTTTCTGGAAGTACGATCATCGGAGATGAATGCTGTGGTTCAGAGTGTCATGCCTCTGGTTATGAGCCATTATTGATGCATGATGAA GCTACAAGAGCAACAAAGTTCCTGGAATATCAGAAGTCCTTTTTGAATGGATTGCTTGGAGATGCTTTCATGGTTGGATCTTACAACCGCTCTGTGGATA TAGGGTGGAAGGAGTTTCATTGCCCTCAGTGTTCGTCGCTTCTAGGAGCTTACCCTGTTACTAGAGGCACTAATACCCCAGTGGATGACGGTATTCGGCT CTTCAAATGCTCCATCTCTACCGGCTTGCCAGCTTCCGGGCCAGGCGACATTTTCAGGAGGTACACAATGGAGAAGATGTTCACAAACAAGCTGGTGGAG AATGCGAAAGACGAGTTGTCATACCGGACTCTGGTGAAGGATCTGGTGACTAAATCTCCCATGCTGCAAGTTGTTCTGTTGAATCCAAACTCATGGAGCT CTACCGGCATTTGCTTGGACTCTGCTGAATCCGTTTTGAAGCTGAATATGAGACCAGTAGTTAAAGTTCTGTTCTCCAGCTGTTCGAATGGTGCAGAGTG GAGGGTGAAGCATACTGCAGATGAAGCATTCATCGTGAAACCTCTAATCAACGAGCTTAACAATGCCTTGGAGACTTGTAAGCATCATCTTCCCGCTTCG TTTGCCCAAGTCGAGAATATGAGATTGTCTACCCTCTTGCGATAA
AA sequence Show only first row Show all	>Lus10021459 pacid=23179211 polypeptide=Lus10021459 locus=Lus10021459.g ID=Lus10021459.BGIv1.0 annot-version=v1.0 MNSENPKKWRFTWEAQSHVPNLKLFIFNPGSRPSSDCSNLNVHLKLSQSHVLVSWIEEASAVGGENFSLKVPIPNVLIDSEIPVSFRALDDHIEVKVVLL LPVDHPILSSFESSLDSIPLAMNSDLKRLSSMEEGVKFYCRMCSTQLTKSAIRKFEVMPSDNWREVADNWFGGCCCSFGGVGEELVNTFADAYECKKGLC LLSSPAVSLCKDDIIGRESSDSDVAKLCEPEEIPVSETFHGRKKDEHQNGQVNSRDDGETVKCEDLEGKNRFSGSTIIGDECCGSECHASGYEPLLMHDE ATRATKFLEYQKSFLNGLLGDAFMVGSYNRSVDIGWKEFHCPQCSSLLGAYPVTRGTNTPVDDGIRLFKCSISTGLPASGPGDIFRRYTMEKMFTNKLVE NAKDELSYRTLVKDLVTKSPMLQVVLLNPNSWSSTGICLDSAESVLKLNMRPVVKVLFSSCSNGAEWRVKHTADEAFIVKPLINELNNALETCKHHLPAS FAQVENMRLSTLLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26750			unknown protein		Lus10021459 [exp]	0	1
AT1G48380		HYP7, RHL1	HYPOCOTYL 7, root hair initiat...		Lus10017988 [exp]	1.0	0.8096
AT1G55205			unknown protein		Lus10032319 [exp]	3.2	0.8063
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10029293 [exp]	4.9	0.7689
AT2G25740			ATP-dependent protease La (LON...		Lus10005481 [exp]	5.2	0.7422
AT1G18850			unknown protein		Lus10023616 [exp]	10.0	0.7563
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10018862 [exp]	11.7	0.7068
AT2G45620			Nucleotidyltransferase family ...		Lus10015854 [exp]	16.1	0.7796
AT3G18035		HON4	winged-helix DNA-binding trans...		Lus10024594 [exp]	17.8	0.7468
AT3G44850			Protein kinase superfamily pro...		Lus10005363 [exp]	18.5	0.7451
AT1G55040			zinc finger (Ran-binding) fami...		Lus10031502 [exp]	19.4	0.6965

Compare expression of checked genes

Lus10021459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.