Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28250 556 / 0 NCRK Protein kinase superfamily protein (.1.2) AT3G58690 249 / 5e-76 Protein kinase superfamily protein (.1) AT5G38560 249 / 5e-73 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G10620 246 / 2e-71 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT4G02010 245 / 5e-71 Protein kinase superfamily protein (.1) AT4G34500 234 / 7e-70 Protein kinase superfamily protein (.1) AT1G70460 240 / 2e-69 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 239 / 4e-69 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G24030 229 / 1e-68 Protein kinase superfamily protein (.1.2) AT5G02800 228 / 5e-68 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016098 [exp] 1189 / 0 AT2G28250 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10029151 [exp] 240 / 5e-72 AT1G23540 575 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10013014 [exp] 239 / 1e-71 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10029948 [exp] 237 / 5e-70 AT1G54820 469 / 1e-162 Protein kinase superfamily protein (.1) Lus10004461 [exp] 235 / 2e-69 AT1G54820 465 / 4e-161 Protein kinase superfamily protein (.1) Lus10011098 [exp] 237 / 1e-68 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10026335 [exp] 231 / 2e-68 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10009983 [exp] 229 / 2e-68 AT3G62220 586 / 0.0 Protein kinase superfamily protein (.1) Lus10038042 [exp] 228 / 2e-68 AT3G62220 588 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G010400 [exp] 758 / 0 AT2G28250 597 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G212600 [exp] 753 / 0 AT2G28250 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.013G025700 [exp] 246 / 2e-74 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.014G143100 [exp] 244 / 6e-74 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 243 / 2e-70 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.008G145900 [exp] 233 / 3e-70 AT1G24030 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G119100 [exp] 242 / 6e-70 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.005G036600 [exp] 233 / 2e-69 AT1G54820 434 / 4e-150 Protein kinase superfamily protein (.1) Potri.002G194700 [exp] 239 / 5e-69 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.001G204000 [exp] 229 / 7e-69 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10021460 pacid=23179135 polypeptide=Lus10021460 locus=Lus10021460.g ID=Lus10021460.BGIv1.0 annot-version=v1.0 ATGAAGTTTTCAGCTTTCCTTTCTTTCTATCTTGAGTTCTTCTCACCATCTTTTAGCTCTCTTCTTCTTTGGTTCAGATCAGAGGCTTTAAGATTGAGGG AGTTTCAGGACACAACTGCTGCTCCTAATGAAGTTTTGATACAAATGAAGGTCTACGTAGAAGTCGCGTTTGCCTGTCTTTTAGCCTTGATTTTATTGCC CCAAGGTTACTGCGACCAACTTCCTACCACACCAGGCATAAAAAACTGGACATGTGCGTGTTCTTTATCATATCCAGGAAATCAGAGCTATGTTAGCTCA ACCTGTTCTCAGTCCTGTGATTGCAATCAAGCCAATGGGGGTATCTGGACATGCACCTGTCCAGCTGATGGACTTCCGAGAATAGCCGATTCCAGTCATG ATTCGACTTGTTTTACAGCATGCAACTGCACTATTGGATCTCTGACTGGACTCAGAACTTCACCAAAGAAACACATTGCGAGCAGGGTCCTTGTCATCAT TCTGCTTCTTTGCGTCATACTCACAACTCTGGCCTTTGTGGCTTCTGTGACATTTTACGTCTATAGAAGGGAGAAGTTCCTTGTTGAATCACCTGGGTTC TCCTCAGATAGACTGGCGAGTTTCAGTAGTAGAACCCATTTGATAAGTCAGAGAACGTATTCCACAGAATCAGATTACAAAGGAAGCAGCATCAGTTGCC CCACTAATTCCGTCTCAGGGTGTTTTGGCAAAGCTTCTTTCCTATGCGGGAACAAGAAAGACGTTGTGTACGGAGTCATAAGTCGGTTTTCATACCCCGA GCTAGAATATGCAACTGAGAAGTTCTCAGATTCCAATCTGATAGGATGTGGGGCAAGCAGTTTCGTGTATCGTGGCCTGCTACGAGATGGTACGAGTGTG GCCATCAAACGACTCGAGGCTCACAAGGGACCTGATTTCGAGTCGGTTTTTTCGACAGAGGTTGAATTGCTGTCCAGGCTCAATCACTGCCATGTTGTGC CTTTGCTTGGTTACTGCTCAGAGTTCCAAGGAAAGCATTCTGAGAGGCTGCTCGTATTCGAGTACATGCCCAACGGTAACCTGAGAGATAGCTTGGACAG CACTCTAGGTGACAACTTGACGTGGGAAATTCGTGTCATGATAGCCATAGGAGCTGCAAGGGGCTTGGAGTATCTCCACGCAGCAGCTGCCCCTAGAATC TTGCATCGAGACGTCAAGTCCACGAATATTCTCCTTGACGAAAGTTGGAGAGCTAAGATTACGGATCTTGGCATGGCCAAATGCTTACGTGGAGATGATG CCCCGAGTAGTTCCAGTTCTCCAGCCCGAATGCAGGGCACTTTTGGATATTTTGCACCCGAGTATGCTATGATCGGCAGGGCTTCGCTTATGTCTGATGT CTTCAGTTTTGGAGTGGTACTTCTTGAGCTTATTACTGGTCGACACCCAATCCATAAAACTCAGAACAAAGGCGAAGAAAGCCTCGTCTTTTGGGCAACT CCGAGACTGCTAGATAGTAGACGAGTGATATCCGAGCTGCCCGATCCAAGGCTGAAGGGGAACTTCCCAGAAGAGGAGATGCATATAATGGCTTACCTGG CTAAAGAGTGCCTGTTACTGGATCCTGATGCTAGACCAACCATGAGTGAGGTTGTCCAAATCCTTTCGACAATGGCACCCGACAAATCCAGCCGGAGAAA CGTACCAGTCAGCCTCTATCAGATGCCTTCCACCGACAGCTTGAGAAGCGAACCATCATTCATCGACAAAACCGAACTGGTAAACGAAGTTCATGTCGAC TCAAACGATCCAACCGAAGCTAAGTTAACAAGTCGTCAGTCATCCAACCGAAACGTGGATCATGATCATGAAGCAATAATAGACATTACAGAGCATAGCC GAGTTAGCGATGCGAATAATAAACCAGATACTGTTTCGGCTGAGTATATGGAGAGGCTGATCCACTTGACTAATCCGAATGCCCGTGCCTCGGAAGATGA AGTGGTCGACATAACCGAGCCTCGCTTCGAGTCATTTCGTGTTGCGAATATGAAATCACCCCCGAGATAA
AA sequence Show only first row Show all	>Lus10021460 pacid=23179135 polypeptide=Lus10021460 locus=Lus10021460.g ID=Lus10021460.BGIv1.0 annot-version=v1.0 MKFSAFLSFYLEFFSPSFSSLLLWFRSEALRLREFQDTTAAPNEVLIQMKVYVEVAFACLLALILLPQGYCDQLPTTPGIKNWTCACSLSYPGNQSYVSS TCSQSCDCNQANGGIWTCTCPADGLPRIADSSHDSTCFTACNCTIGSLTGLRTSPKKHIASRVLVIILLLCVILTTLAFVASVTFYVYRREKFLVESPGF SSDRLASFSSRTHLISQRTYSTESDYKGSSISCPTNSVSGCFGKASFLCGNKKDVVYGVISRFSYPELEYATEKFSDSNLIGCGASSFVYRGLLRDGTSV AIKRLEAHKGPDFESVFSTEVELLSRLNHCHVVPLLGYCSEFQGKHSERLLVFEYMPNGNLRDSLDSTLGDNLTWEIRVMIAIGAARGLEYLHAAAAPRI LHRDVKSTNILLDESWRAKITDLGMAKCLRGDDAPSSSSSPARMQGTFGYFAPEYAMIGRASLMSDVFSFGVVLLELITGRHPIHKTQNKGEESLVFWAT PRLLDSRRVISELPDPRLKGNFPEEEMHIMAYLAKECLLLDPDARPTMSEVVQILSTMAPDKSSRRNVPVSLYQMPSTDSLRSEPSFIDKTELVNEVHVD SNDPTEAKLTSRQSSNRNVDHDHEAIIDITEHSRVSDANNKPDTVSAEYMERLIHLTNPNARASEDEVVDITEPRFESFRVANMKSPPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28250		NCRK	Protein kinase superfamily pro...		Lus10021460 [exp]	0	1
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10032887 [exp]	1.7	0.8670
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10001556 [exp]	2.0	0.8529
AT3G29180			Protein of unknown function (D...		Lus10037132 [exp]	6.9	0.7954
AT5G05820			Nucleotide-sugar transporter f...		Lus10016446 [exp]	7.9	0.7394
AT2G39920			HAD superfamily, subfamily III...		Lus10040231 [exp]	8.7	0.7809
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10015192 [exp]	9.4	0.8581
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10028638 [exp]	10.2	0.8558
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10043341 [exp]	10.6	0.7775
AT2G39920			HAD superfamily, subfamily III...		Lus10002714 [exp]	11.0	0.8059
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Lus10021259 [exp]	11.7	0.8248

Compare expression of checked genes

Lus10021460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.