Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28260 1005 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT4G30360 754 / 0 ATCNGC17 cyclic nucleotide-gated channel 17 (.1) AT2G24610 750 / 0 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT4G30560 722 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT5G53130 721 / 0 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT2G23980 712 / 0 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT3G48010 709 / 0 ATCNGC16 cyclic nucleotide-gated channel 16 (.1) AT1G19780 707 / 0 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT5G57940 705 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT1G15990 702 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037394 [exp] 1087 / 0 AT2G28260 983 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10016097 [exp] 937 / 0 AT2G28260 689 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10041319 [exp] 872 / 0 AT2G28260 800 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10015510 [exp] 771 / 0 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10023203 [exp] 767 / 0 AT4G30360 1002 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10019983 [exp] 763 / 0 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10042434 [exp] 721 / 0 AT2G24610 916 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10002363 [exp] 713 / 0 AT3G48010 919 / 0.0 cyclic nucleotide-gated channel 16 (.1) Lus10039486 [exp] 712 / 0 AT5G14870 985 / 0.0 cyclic nucleotide-gated channel 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G010700 [exp] 1030 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G097600 [exp] 775 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.018G106100 [exp] 725 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.017G067000 [exp] 721 / 0 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1) Potri.018G009200 [exp] 720 / 0 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1) Potri.012G002200 [exp] 711 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.015G019100 [exp] 709 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.013G108200 [exp] 701 / 0 AT5G14870 949 / 0.0 cyclic nucleotide-gated channel 18 (.1) Potri.003G183000 [exp] 693 / 0 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.001G043900 [exp] 685 / 0 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10021461 pacid=23179181 polypeptide=Lus10021461 locus=Lus10021461.g ID=Lus10021461.BGIv1.0 annot-version=v1.0 ATGGGTTATTCAAATTCAAGATCTGTCAGGTTTAGAGATGATCCTGAACTTACAAAGCATCCAACAAAGAACAATCCAGACAACACCACACTAAAAAAGC TAAAGTACAACATAGCCGGCACTCAAATACCAAACCCTACCTGGCCCGGCCGATCACTCAAGGCGAAAGTCCTGTCTCGAGTCTTCTCGGAGGACTACGA GAGGGTGAAGAGGAACATACTCGACCCTCGAGGGGAGACGGTTCGAAGATGGTCCAAGATCTTCTTAGTGGCATGTTTGGTCGCTTTGTTTGTTGACCCT CTCTTCTTCTACTTGCCTAGAGTCAGAAGCCATGAAGCATGCATAGAGATAGGGAGGCCACTTGAGTTCACCCTCACGATACTTAGATCAGTAGCTGATG TCTTCTACATGGTTCACATTTACATCAAGTTCCGTACCGCTTATGTCGCGCCTAGTTCTCGAGTTTTCGGGAGAGGCGAGCTTGTTATCGACCCCGAGAA GATCGCTAATCGGTACCTTAGGTGGAACTTTTGGCTTGACCTTGTTGCCGCCCTCCCTTTGCCTCAGGTACTGATTTGGCTAATCATACCAAACCTCGAA GGTTCGACCATGGCTAACACGAAAAACGTCCTCCGATTCATCATCATTTTCCAGTACCTCCCAAGGCTTTACCTGATTTTCCCACTCTCTTCACAAATTG TTAAGGCCACTGGCTTTGTGACTGAGACTGCTTGGGCTGGTGCTGCTTATAACTTGATGCTTTACATGCTAGCAAGCCATGTTTTGGGAGCTTGTTGGTA CCTACTATCAATTGAAAGACAAGAGTCATGCTGGCTGAGGGCCTGTGACAAGGAGAAGCCAACTTGCAACTTCAAGTTCTTTGATTGCAACTTGGTCGGC GACCCTCGAAGGGTCGCCTGGTTCGAGTCGAGCAACTCCTCGAGCCTTTGCAAGCCAGATAACGGGTTCTACCAGTTCGGTATCTATGGCGATGCTGCCA CTTTTGGTGTTTCAACCACTTCGTTCTTCGATAAGTACTTCTACTGCCTCTGGTGGGGCTTGAAGAACCTTAGCTCGTTAGGGCAAAACCTTTCGACGAG CACTTACGTAGGAGAGATCGCATTCGCCATCGTTGTCGCGATCCTCGGCTTGGTCCTCTTCGCATTGCTCATTGGGAACATGCAGACATACTTGCAATCA ACAACAGTTAGGCTGGAAGAGTGGAGGATCAAGAGAACTGACACGGAACAATGGATGCACCATAGGCAGCTGCCTCCTGAGCTCAGGAATTCTGTCAGGA AATATGATCAGTACAAGTGGCTCGCAACTCGAGGTGTCGACGAAGAAAACCTCCTCAAGGGACTCCCCTTGGACCTCCGTCGAGACATCAAACGACACCT CTGCCTTGACCTCGTTCGCCGTGTACCACTATTCGATCAAATGGACGAGAGAATGTTGGACGCAATATGCGAGAGGCTAAAGCCAGAGCTATCCACCGAA GGGACAGTCCTCGTCCGAGAAGGAGACCTAGTAGACGAAATGCTCTTCATAATCCGCGGCAATCTCGATTCCTACACAACCAACGGAGGCCGGACGGGGT TCTTCAACTCCTGCAAGATCGGCCCGGGTGACTTCTGCGGTGAAGAGTTGCTGACGTGGGCGCTGGACCCGCGCCCGAGCGTGATCCTGCCGAATTCGAC TCGAACGGTGAAGTCCATTTCAGAGGTCGAGGCGTTCGCACTAAGGGCGGAAGATCTGAAGTTCGTGGCGTCGCAGTTCAGGCGGCTGCACAGTAAGCAG CTGAGGCACAAGTTCAGATTCTATTCCCACCAGTGGCGGACTTGGGCGGCGTGCTTTGTTCAGGCGGCGTGGCGGCGGTTCAAGAAGAGGAAGGAGTCGG CGGAGCTGCGGGCCAGGGAGGAGGCGGCGGTGGAGGAGAAGGGTTTCGCCACAGCTGCGGCCGTGAGGAAGGGGGTTGTGGTGGCGATGAAGCGGTCCGG GTCGGGTACGGTGGCTCCACTGCAAAAGCCGTCGGAGCCGGGTTTTTCGGGGGATGATGGGTGGTTTTGGTTGGTTTGA
AA sequence Show only first row Show all	>Lus10021461 pacid=23179181 polypeptide=Lus10021461 locus=Lus10021461.g ID=Lus10021461.BGIv1.0 annot-version=v1.0 MGYSNSRSVRFRDDPELTKHPTKNNPDNTTLKKLKYNIAGTQIPNPTWPGRSLKAKVLSRVFSEDYERVKRNILDPRGETVRRWSKIFLVACLVALFVDP LFFYLPRVRSHEACIEIGRPLEFTLTILRSVADVFYMVHIYIKFRTAYVAPSSRVFGRGELVIDPEKIANRYLRWNFWLDLVAALPLPQVLIWLIIPNLE GSTMANTKNVLRFIIIFQYLPRLYLIFPLSSQIVKATGFVTETAWAGAAYNLMLYMLASHVLGACWYLLSIERQESCWLRACDKEKPTCNFKFFDCNLVG DPRRVAWFESSNSSSLCKPDNGFYQFGIYGDAATFGVSTTSFFDKYFYCLWWGLKNLSSLGQNLSTSTYVGEIAFAIVVAILGLVLFALLIGNMQTYLQS TTVRLEEWRIKRTDTEQWMHHRQLPPELRNSVRKYDQYKWLATRGVDEENLLKGLPLDLRRDIKRHLCLDLVRRVPLFDQMDERMLDAICERLKPELSTE GTVLVREGDLVDEMLFIIRGNLDSYTTNGGRTGFFNSCKIGPGDFCGEELLTWALDPRPSVILPNSTRTVKSISEVEAFALRAEDLKFVASQFRRLHSKQ LRHKFRFYSHQWRTWAACFVQAAWRRFKKRKESAELRAREEAAVEEKGFATAAAVRKGVVVAMKRSGSGTVAPLQKPSEPGFSGDDGWFWLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10021461 [exp]	0	1
AT2G32970			unknown protein		Lus10030016 [exp]	6.8	0.9568
AT5G04190		PKS4	phytochrome kinase substrate 4...		Lus10013442 [exp]	11.9	0.9723
AT2G48030			DNAse I-like superfamily prote...		Lus10008177 [exp]	13.8	0.9185
AT5G20950			Glycosyl hydrolase family prot...		Lus10043457 [exp]	14.3	0.9542
AT2G35880			TPX2 (targeting protein for Xk...		Lus10016193 [exp]	14.4	0.9085
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10003792 [exp]	17.1	0.9426
					Lus10036646 [exp]	22.9	0.9566
AT5G04190		PKS4	phytochrome kinase substrate 4...		Lus10040995 [exp]	25.8	0.9562
AT2G04220			Plant protein of unknown funct...		Lus10043317 [exp]	30.8	0.9553
AT1G11545		XTH8	xyloglucan endotransglucosylas...		Lus10018365 [exp]	34.2	0.9504

Compare expression of checked genes

Lus10021461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.