Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28310 581 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) AT1G08040 570 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G67850 540 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT3G27470 513 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G13000 492 / 3e-174 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT3G26440 485 / 1e-171 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) AT1G24570 470 / 5e-166 Protein of unknown function (DUF707) (.1) AT4G12840 284 / 9e-93 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT4G18530 254 / 5e-81 Protein of unknown function (DUF707) (.1) AT1G61240 244 / 5e-77 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016095 [exp] 781 / 0 AT2G28310 604 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10037396 [exp] 700 / 0 AT5G60700 1181 / 0.0 glycosyltransferase family protein 2 (.1) Lus10041316 [exp] 696 / 0 AT2G28310 590 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10011414 [exp] 539 / 0 AT1G67850 611 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10006472 [exp] 518 / 0 AT1G67850 598 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10032090 [exp] 505 / 2e-179 AT3G27470 564 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10003659 [exp] 491 / 3e-174 AT3G27470 563 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10022287 [exp] 473 / 2e-166 AT3G27470 548 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10035229 [exp] 437 / 1e-153 AT1G67850 452 / 1e-159 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G011000 [exp] 587 / 0 AT2G28310 608 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Potri.010G047200 [exp] 549 / 0 AT1G67850 581 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.008G185600 [exp] 548 / 0 AT1G67850 610 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.017G065200 [exp] 528 / 0 AT3G27470 605 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.019G053000 [exp] 269 / 5e-87 AT4G18530 444 / 4e-156 Protein of unknown function (DUF707) (.1) Potri.011G045300 [exp] 261 / 1e-83 AT1G61240 534 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.014G175800 [exp] 259 / 2e-83 AT4G12840 482 / 1e-170 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.004G036800 [exp] 252 / 3e-80 AT1G61240 535 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.004G227700 [exp] 248 / 5e-79 AT4G18530 466 / 1e-164 Protein of unknown function (DUF707) (.1) Potri.003G003100 [exp] 246 / 4e-78 AT4G18530 480 / 4e-170 Protein of unknown function (DUF707) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05212 [flax] [poplar] DUF707 Protein of unknown function (DUF707)
Representative CDS sequence Show only first row Show all	>Lus10021463 pacid=23179170 polypeptide=Lus10021463 locus=Lus10021463.g ID=Lus10021463.BGIv1.0 annot-version=v1.0 ATGAGCTTGATTTCTTCCTTGTGTTGCAGCGGGTTTTCCAGGAGAACAACTGACAGTGCTAGGCTTATTATCACAGCACTTCTAGGAATTATGTTTGGAT TTCTAATTGGTGTTTCATTTCCTTCGAGTTCTCTTTCTCAGATCCTCATCCCTTCTGGGATCAGAAATCGATACTACGATATGCCATCAATTGATGCAAG AAGATCTAACACAGGTGAACCTGAAAATCGTGAATCGTACAATATCCCAAAGATTTTTGCTCCAACAAATCCGCGTGGTGCAGAGTCATTGCCTCCTGGA ATTGTTGAAGCCGAAACTGACCTTTACTTACGCAGATTATGGGGTGAGCCTAGCGAGGATCTCAAGAAAAAGCCAAAGTACTTGGTGACCTTTACAGTTG GTTGGAATCAGAGACATAACATAAATGCAGCAGTTCGAAAGTTTTCAGATGATTTCACTATTATGCTGTTCCACTATGATGGTCGGGTAACTGAATGGGA TGAATTTGAGTGGTCAAAATCTGCTATTCATATAAGCGTAAAGAGGCAAACAAAATGGTGGTACGCTAAAAGATTCTTGCACCCAGATGTTGTTGCACCA TACGATTATATTTTCATATGGGATGAAGATCTTGGAGTTGAACATTTTAACGCAGACAAATACATCCACTTGGTTAAAAAGCATGGGCTAGAGATCTCTC AGCCAGGTCTTGAGCCTAACAATGGTCTCACGTGGCAGATGACGAAAAGGAGAGGTGACCGGGATGTTCACAAGGATACAGAGGAGAAACCGGGCTGGTG TAGTGATCCACATTTACCTCCCTGTGCAGCCTTCGTGGAAATCATGGCCCCTGTATTTTCTCAGAAGGCTTGGCGATGCGTGTGGCATATGATTCAGAAT GATTTGGTGCACGGATGGGGATTGGATTTCGCTCTCAGAAGATGCGTAGAGCCTGCACACGAGAAAATCGGGGTGGTCGATTCGCAATGGATTATACATC AAGTCATTCCTTCTCTCGGTAGCCAGGGACAATCTGAAAATGGAAAAGCACCATGGGAAGGGGTGAGAGCAAGGTGCAAGAGCGAATGGTCAATGTTCCA GGAGCGCCTCCTTCACGCCGATAAAGCCTACTTCTCGAGCCGCGCTGGCAATGCCGATAACAAGGAGTACTTGGCTCGACTTAAGGGTATCGGAAACTGA
AA sequence Show only first row Show all	>Lus10021463 pacid=23179170 polypeptide=Lus10021463 locus=Lus10021463.g ID=Lus10021463.BGIv1.0 annot-version=v1.0 MSLISSLCCSGFSRRTTDSARLIITALLGIMFGFLIGVSFPSSSLSQILIPSGIRNRYYDMPSIDARRSNTGEPENRESYNIPKIFAPTNPRGAESLPPG IVEAETDLYLRRLWGEPSEDLKKKPKYLVTFTVGWNQRHNINAAVRKFSDDFTIMLFHYDGRVTEWDEFEWSKSAIHISVKRQTKWWYAKRFLHPDVVAP YDYIFIWDEDLGVEHFNADKYIHLVKKHGLEISQPGLEPNNGLTWQMTKRRGDRDVHKDTEEKPGWCSDPHLPPCAAFVEIMAPVFSQKAWRCVWHMIQN DLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLGSQGQSENGKAPWEGVRARCKSEWSMFQERLLHADKAYFSSRAGNADNKEYLARLKGIGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28310			Protein of unknown function (D...		Lus10021463 [exp]	0	1
AT2G28310			Protein of unknown function (D...		Lus10000145 [exp]	3.3	0.6578
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003113 [exp]	12.2	0.6161
AT4G00755			F-box family protein (.1.2)		Lus10038879 [exp]	13.6	0.5885
					Lus10029080 [exp]	15.4	0.4857
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10021625 [exp]	23.1	0.6193
AT3G01720			unknown protein		Lus10014878 [exp]	51.2	0.5509
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10006066 [exp]	51.4	0.5589
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10041300 [exp]	55.1	0.5562
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10017308 [exp]	57.5	0.5294
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Lus10019782 [exp]	80.6	0.5238

Compare expression of checked genes

Lus10021463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.