Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08010 132 / 6e-37 GATA GATA11 GATA transcription factor 11 (.1.2) AT3G24050 124 / 4e-34 GATA GATA1 GATA transcription factor 1 (.1) AT3G54810 124 / 6e-34 GATA GATA8, BME3, BME3-ZF GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) AT1G08000 124 / 9e-34 GATA GATA10 GATA transcription factor 10 (.1.2) AT4G36240 119 / 2e-32 GATA GATA7 GATA transcription factor 7 (.1) AT5G66320 120 / 4e-32 GATA GATA5 GATA transcription factor 5 (.1.2) AT3G51080 119 / 9e-32 GATA GATA6 GATA transcription factor 6 (.1) AT4G34680 116 / 2e-31 GATA GATA3 GATA transcription factor 3 (.1.2) AT4G32890 114 / 4e-30 GATA GATA9 GATA transcription factor 9 (.1) AT5G25830 113 / 1e-29 GATA GATA12 GATA transcription factor 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016092 [exp] 421 / 8e-151 AT1G08010 159 / 2e-47 GATA transcription factor 11 (.1.2) Lus10041313 [exp] 169 / 2e-51 AT1G08010 163 / 2e-48 GATA transcription factor 11 (.1.2) Lus10037398 [exp] 166 / 3e-50 AT1G08010 169 / 1e-50 GATA transcription factor 11 (.1.2) Lus10031096 [exp] 121 / 8e-35 AT5G66320 137 / 1e-40 GATA transcription factor 5 (.1.2) Lus10023684 [exp] 121 / 9e-34 AT3G24050 168 / 3e-52 GATA transcription factor 1 (.1) Lus10037994 [exp] 125 / 2e-33 AT3G54810 160 / 6e-46 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Lus10009227 [exp] 124 / 4e-33 AT3G54810 162 / 8e-47 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Lus10011762 [exp] 120 / 6e-33 AT3G24050 174 / 1e-53 GATA transcription factor 1 (.1) Lus10041810 [exp] 115 / 4e-31 AT5G66320 177 / 1e-54 GATA transcription factor 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G211800 [exp] 155 / 7e-46 AT1G08010 150 / 4e-43 GATA transcription factor 11 (.1.2) Potri.010G223300 [exp] 129 / 2e-35 AT3G54810 148 / 8e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Potri.008G038900 [exp] 127 / 1e-34 AT3G54810 150 / 1e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Potri.004G161500 [exp] 119 / 6e-32 AT5G66320 178 / 2e-53 GATA transcription factor 5 (.1.2) Potri.009G123400 [exp] 119 / 7e-32 AT5G66320 179 / 8e-54 GATA transcription factor 5 (.1.2) Potri.013G059600 [exp] 117 / 3e-31 AT5G25830 128 / 1e-34 GATA transcription factor 12 (.1) Potri.003G174800 [exp] 115 / 4e-31 AT3G24050 167 / 6e-51 GATA transcription factor 1 (.1) Potri.019G033000 [exp] 116 / 7e-31 AT4G32890 127 / 2e-34 GATA transcription factor 9 (.1) Potri.001G188500 [exp] 115 / 9e-31 AT4G32890 201 / 7e-63 GATA transcription factor 9 (.1) Potri.001G053500 [exp] 114 / 1e-30 AT3G24050 171 / 4e-52 GATA transcription factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00320 [flax] [poplar] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Lus10021466 pacid=23179199 polypeptide=Lus10021466 locus=Lus10021466.g ID=Lus10021466.BGIv1.0 annot-version=v1.0 ATGGCCGACTCTTGGATTTACGATTGGGCCAATTTTAGCGGGCTCCCTGATGACTTCTCGTTGGAGAACTTAGATTTGTCGCTGGAGTCTCTAGAGGACG TTGATCCTGCAGTGGACTGGGACACTAAGTTCAAAGACCTTGAGCCTCCTTCAGTTTTCCTGCCCAACTTCCCGCCTGATATCTCCAGTGCTAATGACAT CAAACCTGTGAAAGTGGAGGGGACTTCAGTTCTGCAAAATGAATCTCCCGAGTTGAAAAAGTCGTTCCGAACCTCGAGTCCAGTATCTGTCCTGGACAAC AACAGCAGCTCTTCTTGCTCGGCCGAGATCCCAACCAGACGCCCTCGAAGCAAAGGCGTTCGCTCACAGCGCCGCACCTATGAGTTCTTCCACCGCCTCT TTGCCGGTGAAAGGAGGTTTCACCCGGTAGCCCCTCTCAACTCCGAAACTGAATCCAACAAGAAGAAGAATCTCACTGCTGTTTCTCGCAACATCTCAGA AGCTGCCAAGAAGAAGCAGCCGGTTATTAACAGCAAATGCTCTCACTGCGGGGTGACACATACTCCTCAATGGAGAGAAGGACCGATGGGCCCGAAGACT CTCTGCAACGCTTGTGGGGTCCGCCACAGGTCTGGCCGTCTTTTCCCCGAGTACCGCCCTGCTGGCAGTCCGACCTTCGTCCCCGAACTGCACTCCAACT CGCACAGGAAGGTTCTCGAGATGAGGATGAAAGCTTCATCCTCCAATGGACCCTGA
AA sequence Show only first row Show all	>Lus10021466 pacid=23179199 polypeptide=Lus10021466 locus=Lus10021466.g ID=Lus10021466.BGIv1.0 annot-version=v1.0 MADSWIYDWANFSGLPDDFSLENLDLSLESLEDVDPAVDWDTKFKDLEPPSVFLPNFPPDISSANDIKPVKVEGTSVLQNESPELKKSFRTSSPVSVLDN NSSSSCSAEIPTRRPRSKGVRSQRRTYEFFHRLFAGERRFHPVAPLNSETESNKKKNLTAVSRNISEAAKKKQPVINSKCSHCGVTHTPQWREGPMGPKT LCNACGVRHRSGRLFPEYRPAGSPTFVPELHSNSHRKVLEMRMKASSSNGP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10021466 [exp]	0	1
AT4G09160			SEC14 cytosolic factor family ...		Lus10009458 [exp]	1.0	0.9096
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10008933 [exp]	2.0	0.8937
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10004650 [exp]	2.4	0.8947
AT3G22070			proline-rich family protein (....		Lus10039700 [exp]	5.5	0.8937
AT5G38640			NagB/RpiA/CoA transferase-like...		Lus10027234 [exp]	7.4	0.8806
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Lus10009595 [exp]	8.0	0.8846
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10021862 [exp]	8.7	0.8928
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10026663 [exp]	8.8	0.8921
AT1G16340		ATKDSA2, ATKSDA	Aldolase superfamily protein (...		Lus10009596 [exp]	9.5	0.8741
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10041991 [exp]	10.2	0.8696

Compare expression of checked genes

Lus10021466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.