Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28350 541 / 0 ARF ARF10 auxin response factor 10 (.1) AT4G30080 521 / 7e-178 ARF ARF16 auxin response factor 16 (.1) AT1G77850 329 / 1e-104 ARF ARF17 auxin response factor 17 (.1) AT1G19850 247 / 5e-71 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G62000 243 / 6e-70 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT2G33860 228 / 7e-66 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT2G46530 218 / 2e-62 ARF ARF11 auxin response factor 11 (.1.2.3) AT5G60450 221 / 3e-62 ARF ARF4 auxin response factor 4 (.1) AT1G19220 204 / 1e-55 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT1G34310 199 / 2e-55 ARF ARF12 auxin response factor 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026510 [exp] 541 / 0 AT4G30080 694 / 0.0 auxin response factor 16 (.1) Lus10016090 [exp] 540 / 0 AT2G28350 266 / 3e-83 auxin response factor 10 (.1) Lus10016091 [exp] 536 / 0 AT4G30080 315 / 7e-103 auxin response factor 16 (.1) Lus10019940 [exp] 518 / 1e-176 AT4G30080 660 / 0.0 auxin response factor 16 (.1) Lus10023519 [exp] 492 / 3e-167 AT4G30080 622 / 0.0 auxin response factor 16 (.1) Lus10040403 [exp] 490 / 2e-166 AT4G30080 625 / 0.0 auxin response factor 16 (.1) Lus10024753 [exp] 334 / 4e-106 AT1G77850 494 / 2e-169 auxin response factor 17 (.1) Lus10024754 [exp] 331 / 4e-105 AT1G77850 505 / 1e-173 auxin response factor 17 (.1) Lus10009770 [exp] 327 / 2e-103 AT1G77850 496 / 4e-170 auxin response factor 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G211700 [exp] 639 / 0 AT2G28350 777 / 0.0 auxin response factor 10 (.1) Potri.010G223200 [exp] 578 / 0 AT4G30080 777 / 0.0 auxin response factor 16 (.1) Potri.008G039000 [exp] 545 / 0 AT4G30080 749 / 0.0 auxin response factor 16 (.1) Potri.009G014800 [exp] 533 / 0 AT2G28350 706 / 0.0 auxin response factor 10 (.1) Potri.006G127500 [exp] 496 / 2e-167 AT4G30080 677 / 0.0 auxin response factor 16 (.1) Potri.016G090300 [exp] 471 / 6e-158 AT4G30080 687 / 0.0 auxin response factor 16 (.1) Potri.002G089900 [exp] 349 / 5e-112 AT1G77850 520 / 2e-179 auxin response factor 17 (.1) Potri.005G171300 [exp] 343 / 6e-110 AT1G77850 534 / 0.0 auxin response factor 17 (.1) Potri.003G163600 [exp] 237 / 5e-68 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.005G236700 [exp] 234 / 4e-66 AT1G19850 1060 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family CL0072 [flax] [poplar] PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10021467 pacid=23179137 polypeptide=Lus10021467 locus=Lus10021467.g ID=Lus10021467.BGIv1.0 annot-version=v1.0 ATGAAGGAGAAGAGCTTTGTAGATCCACAGCTATGGCAAGCATGTGCAGGGAGCTTAGTTCAAATCCCACCTATAAACTCTCACGTCTTCTATTTCCCAC AAGGTCACGCCGAGCACTCTCAATCGCCGGTGAGCTTTCCTCCAGATTGTTCCGAGCTCCCCGCCGCCGTACTCTGCCGCGTCGCCGCCGTGGATTTCCT AGCTGACCAGGACTCCGACGAGGTCTTCTCCAAGCTTACCTTCGTCCCTATCTCGTCGCAATCCGAGGAGAAGGTTTTTGATGGGAGGAGTTTGATGGAG AAAGAGAATAAGTCGGCTTCGTTCGCCAAGACGCTGACGCAGTCCGACGCGAACAACGGCGGAGGATTCTCCGTCCCTCGGTACTGCGCTGAGACGATTT TCCCTCGCCTGGATTACTCCGCTGATCCTCCTGTTCAGACGGTGGTGGCTAAGGACGTCCACGGCGAGGTTTGGAAGTTTCGTCATATTTACCGCGGGAC TCCAAGGAGGCATCTTTTGACTACTGGGTGGAGCTCGTTCGTCAACCGGAAGAAGCTAGTCGCCGGGGACTCGATCGTCTTCCTCCGCAGCGAGTTCGGC GAGCTCTGCGTCGGAATCCGCCGCGCCAAACGCGGAGTCGCCGGAGGAGTCGGAGCTGAAAAGCTCTGCCAGTCTGGTTGGGGAATCAACTCAAACAGTT GGTCTGCAGGTGGGATTTTCAGTCCTTACGGTGGAGTTTCCATCAAACGAAACGGTAGCGGCGATAGCGGCGTCGGAGGAAGAAGAGAAGGACCTGCTGC GCCGGTGAAGGTGACGGCGGAGGAGGTTCTGGAGGCAGCGAGATCGGCAGCTGAAGGGAGACCATTCACTGTTCTTTATTATCCCAGAGGTGGTAGTCCT GAGTTCTATGTCAAAGCTTCTCTGGTTAAGGAATCAATGAGGATTCATTGGAGCTGTGGAATGAGATTCAAGATTCCATTTGAGACTGAAGATTCCTCCA GGATCAGCTGGTTCAATGGCACTGTAGCTTCCGCTCAGGTCTCCGATCCCATTCGCTGGCCGAATTCGCCATGGCGCCTTCTCCAGGTGACATGGGACGA GCCGGACTTGCTGCAGAACGTTCGACGAGTGAGCCCCTGGCTTGTTGAGTTGGTTTCGAGCATACCGATGATCCAACCACCACCGTTACCATTCTCGCCA CCGAGTAAGAAGTCCAGGTTTGACTTCGCCCTCGAGGAAGGGAGATTTCAGTTGCCTTGTTATACAAGCAACAACAGCACCCTAGCGTACTCCAGCGGCA GTTGTTATTATAACACTGCTGCAGGCATACAGGGAGCCAGGCATTTTTTACAAATCGGAGCATCTTTATCAGACCTCCGGTTTAACCAGTATCCGAATTT CGAGCAGCAGTTTGTCGTCAATCCGCAGTGTAGCAGCAATGAGAGCGTCTCTTGCTTGCTCACAATCGGTGGCAGCTCTAGTTCCACCTCGGAGAAGAAG AAGGAGAAGAAAGAGTTCTTACTCTTTGGTCAGGTGATACTCACCGAGCAGCAAGTGGAGGTGAACCGTTCGAGCGAATCGGTCTCGCAGGGCTCCTCGA GCGAGAGTGACGATGAATCGAATCGGACAGCTGGATACTGTTGCAAAGTTTTCATCGAATCGGAAGATGCAGGACGGACCATCGACCTCACTGCATTCGC CTCGTACGAGGATTTGTACACTAGGCTTGTGGACATGTTTGGAATGGACCGAGCTTTGATGTTGAACCGTGTTCTGTACCGTACTGCAGCTGGTGCAGTG AAACGAATCGGAGACGAACCCTTCAGTGTGTTCTCAAGGACTGCAAGTAGACTGACCATACTGATGAATCCTGACCACAATGTCGGAAGGACATGGATGG GTGTGATGGATCATAACGTTGAAATCGGGCTAGAGGGTTCGAACAAGAGAGGAGCTTTGAGCATATTTGCTTAG
AA sequence Show only first row Show all	>Lus10021467 pacid=23179137 polypeptide=Lus10021467 locus=Lus10021467.g ID=Lus10021467.BGIv1.0 annot-version=v1.0 MKEKSFVDPQLWQACAGSLVQIPPINSHVFYFPQGHAEHSQSPVSFPPDCSELPAAVLCRVAAVDFLADQDSDEVFSKLTFVPISSQSEEKVFDGRSLME KENKSASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNRKKLVAGDSIVFLRSEFG ELCVGIRRAKRGVAGGVGAEKLCQSGWGINSNSWSAGGIFSPYGGVSIKRNGSGDSGVGGRREGPAAPVKVTAEEVLEAARSAAEGRPFTVLYYPRGGSP EFYVKASLVKESMRIHWSCGMRFKIPFETEDSSRISWFNGTVASAQVSDPIRWPNSPWRLLQVTWDEPDLLQNVRRVSPWLVELVSSIPMIQPPPLPFSP PSKKSRFDFALEEGRFQLPCYTSNNSTLAYSSGSCYYNTAAGIQGARHFLQIGASLSDLRFNQYPNFEQQFVVNPQCSSNESVSCLLTIGGSSSSTSEKK KEKKEFLLFGQVILTEQQVEVNRSSESVSQGSSSESDDESNRTAGYCCKVFIESEDAGRTIDLTAFASYEDLYTRLVDMFGMDRALMLNRVLYRTAAGAV KRIGDEPFSVFSRTASRLTILMNPDHNVGRTWMGVMDHNVEIGLEGSNKRGALSIFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10021467 [exp]	0	1
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10024183 [exp]	3.5	0.8537
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10042913 [exp]	4.9	0.8449
AT1G06550			ATP-dependent caseinolytic (Cl...		Lus10020758 [exp]	10.7	0.8534
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10010106 [exp]	15.4	0.8412
AT4G12840			Protein of unknown function (D...		Lus10036434 [exp]	16.2	0.7655
AT5G17890		CHS3, DAR4	CHILLING SENSITIVE 3, DA1-rela...		Lus10025852 [exp]	19.1	0.8397
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10018007 [exp]	20.2	0.7839
AT3G19895			RING/U-box superfamily protein...		Lus10000199 [exp]	32.2	0.7786
AT1G52190			Major facilitator superfamily ...		Lus10038614 [exp]	32.7	0.8321
AT1G53165		ATMAP4KALPHA1 ,...	Protein kinase superfamily pro...		Lus10028163 [exp]	34.4	0.8071

Compare expression of checked genes

Lus10021467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.