Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07990 750 / 0 SIT4 phosphatase-associated family protein (.1) AT3G45190 644 / 0 SIT4 phosphatase-associated family protein (.1) AT2G28360 634 / 0 SIT4 phosphatase-associated family protein (.1) AT1G30470 585 / 0 SIT4 phosphatase-associated family protein (.1.2.3) AT1G08005 38 / 0.001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037400 [exp] 848 / 0 AT1G07990 976 / 0.0 SIT4 phosphatase-associated family protein (.1) Lus10016088 [exp] 764 / 0 AT3G45190 840 / 0.0 SIT4 phosphatase-associated family protein (.1) Lus10023354 [exp] 563 / 0 AT1G30470 918 / 0.0 SIT4 phosphatase-associated family protein (.1.2.3) Lus10038452 [exp] 514 / 2e-172 AT1G30470 842 / 0.0 SIT4 phosphatase-associated family protein (.1.2.3) Lus10016089 [exp] 105 / 2e-27 AT2G28360 80 / 1e-19 SIT4 phosphatase-associated family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G014700 [exp] 905 / 0 AT1G07990 1019 / 0.0 SIT4 phosphatase-associated family protein (.1) Potri.004G211500 [exp] 864 / 0 AT1G07990 991 / 0.0 SIT4 phosphatase-associated family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04499 [flax] [poplar] SAPS SIT4 phosphatase-associated protein
Representative CDS sequence Show only first row Show all	>Lus10021468 pacid=23179256 polypeptide=Lus10021468 locus=Lus10021468.g ID=Lus10021468.BGIv1.0 annot-version=v1.0 ATGTTCTGGAAGCTGCCTATTCTCTCCGCTTCCTCTCCCGTGGAGGCAGTACTTGACAAGGAGAACTTCACATTGGAGGAGCTTCTCGATGAGGAAGAGA TAATCCAAGAATGCAAGGCTCTGAACAGCCGTCTGATTAACTTTTTGCGTGACCGAGCTCAAGTGGAGCAGCTACTTCATTACATAATTGATGATCCTCC GGAGGATGCTGAAAACAAAAGAGCCTTCAAGTTTCCATTCATCGCCTGTGAGATATTCATATGTGAAATTGATGTTATTCTTAAGACTTTGGTGGAGGAA GAGGAGTTGATGGACCTGCTGTTCTCTTTCCTGGAACCGGATCGTTCCCATAGTGCTTTTTTAGCTGGCTACTTCAGTAAGGTCGTTGTTTGCTTGATGT TACGCAAAACTGTTCCCCTCATGAACTATGTTCAGGCCCATCAGGATGTTTTCCGAAAGTTGGTTGACTTAATTGGCATCACCTCAATCATGGAGTGCCC TCCAGAAGTCCATGCTAATGCGGCAGAAACTCTTAGTTCAATTACTAGGAACTCTGGATCAGCTTTAGCAACCAAACTCTCCAGTCCAAGTCAGCATATG TATGAGGCACCAATTCCTATAAATCCAGAGACCATAGATGCAATGCTGCCTCAACTAGGTGACTTGCTCAAGTTACTGGACGTGTCATCTGATGAGAAGA TTTTGCCAACAACATATGGTCAACTGAAGCCTCCATTGGGGAAGCATCGTCTTAAGATTGTAGAGTTTATTGCAATTTTGCTGAAAACTAGCAATGAAGC TGCCGAGAAGGAGTTGGTCAGTTCAGGAACCATCGGGAGAGTCCTTGATCTGTTCTTTGAGTACCCATACAATAATGCCTTGCACCACCATGTGGAAAGC ATTATATATTCATGTCTAGAGACCAAGAGCGAATCTGTGATTGATCATCTGCTTCGTGAGTGTGATTTGATAGGAAAGCTTCTTCAGACAGATAAGAAAC CCATAATCTCTGATGAACAGGATCAGCCAACTTTACCTGCTGCTGGGAAACGGGCTCCAAGGTTAGGAAATCTGGGGCATATTACTAGAATTTCCAATAA GCTTGTTCAGCTGGGAAATAGCAACAGCTATATTCACACATATTTACAGGAAAACAGTCAATGGAATGATTGGCAAACCAGTGTTCTGCAAGAGCGTAAC ATTACTGAGAATGTTTACCGTTGGGCTTGCGGCCGTCCGACTGCTTTGCACGATAGAACAAGGGACAGTGATGATGAAGACCTTCATGACAGAGATTATG ATGTAGCGGCTCTGGCAAATAATTTAAATCAGGCATTTAGGTATAAGATTTATGGGAATGAGGATGCTGACGAGCAGGAAAATGGTGGCCTTGATAGAGA TGACGAGGATGTTTACTTTGATGATGAATCTGCTGAAGTAGTTATATCATCGCTCCGGCTTGGTGATGACCAGGGAAGCAATCTATTCACAAACTCGAAT TGGTTTGTGTTCCAAGATGACCGGATCGGCGGTGCACCTGTCAGCACTTCAGCAATGGATGCTTTGGATGATGTCAACTTGAACGGAAATGCAAATGGCG GCGGTAACAGCAGCAGTGATGATGAGGTTGTTGTCGGAGAGGATGATGAGTTGACCGAAACCAAAGATCCGGTCGATGGTACGTCCACTTCCGACCCAAG CGACCTCAATGGCTTCCCAATAACCGATCCAATTCCCCAAGCAGTTGTCAGTTTACCGAAGCTCGAGACTCCAGAGAATCAGGACTTGTTTGGAGTCGCC ACCTCCGTGCCGGAATGGGCAGCCTGGGAAGAAGAATCAGAATCATCATCGAACCTGCAGACTGGTTTGACCGGTCCAACCAGTCTGAATCCGTTCCTTG ATCCAGAAGTCCCTGATCCGGCCAACCTTGACGTGGGTGCCGCTCCCCCTCACGCTGCAGCTCCCTCAACCGGAGAACCATCATCTCTACCGAATGGCTC GTCCCCAACCAGTGACGGTGGCTCGTCTGCAAACAGCGAGACAAGCGTCCCTTCACTCTTCGAGGAGGACGTCGAGTTCGTCGGGGTTGAACCAGAAGGA ACAGAGAAAGCAATGGACCAAGCACTCAAGGAAGGGATAGTCGGTGAAGCTGGACCTTTGAAGAGGAACATTGCTCCGAAATTGCCCGAGAAGGACAACC ACCCGGACGAGGTGAAGGAGTTCAATGATGCCAACTACTGGAAGGTTGATCAAGAGGTCACTGTCGTCGAGTGA
AA sequence Show only first row Show all	>Lus10021468 pacid=23179256 polypeptide=Lus10021468 locus=Lus10021468.g ID=Lus10021468.BGIv1.0 annot-version=v1.0 MFWKLPILSASSPVEAVLDKENFTLEELLDEEEIIQECKALNSRLINFLRDRAQVEQLLHYIIDDPPEDAENKRAFKFPFIACEIFICEIDVILKTLVEE EELMDLLFSFLEPDRSHSAFLAGYFSKVVVCLMLRKTVPLMNYVQAHQDVFRKLVDLIGITSIMECPPEVHANAAETLSSITRNSGSALATKLSSPSQHM YEAPIPINPETIDAMLPQLGDLLKLLDVSSDEKILPTTYGQLKPPLGKHRLKIVEFIAILLKTSNEAAEKELVSSGTIGRVLDLFFEYPYNNALHHHVES IIYSCLETKSESVIDHLLRECDLIGKLLQTDKKPIISDEQDQPTLPAAGKRAPRLGNLGHITRISNKLVQLGNSNSYIHTYLQENSQWNDWQTSVLQERN ITENVYRWACGRPTALHDRTRDSDDEDLHDRDYDVAALANNLNQAFRYKIYGNEDADEQENGGLDRDDEDVYFDDESAEVVISSLRLGDDQGSNLFTNSN WFVFQDDRIGGAPVSTSAMDALDDVNLNGNANGGGNSSSDDEVVVGEDDELTETKDPVDGTSTSDPSDLNGFPITDPIPQAVVSLPKLETPENQDLFGVA TSVPEWAAWEEESESSSNLQTGLTGPTSLNPFLDPEVPDPANLDVGAAPPHAAAPSTGEPSSLPNGSSPTSDGGSSANSETSVPSLFEEDVEFVGVEPEG TEKAMDQALKEGIVGEAGPLKRNIAPKLPEKDNHPDEVKEFNDANYWKVDQEVTVVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45190			SIT4 phosphatase-associated fa...		Lus10021468 [exp]	0	1
AT4G04920		AtSFR6, SFR6	sensitive to freezing 6 (.1.2)		Lus10011192 [exp]	1.7	0.8636
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Lus10038504 [exp]	4.0	0.8684
AT1G17500			ATPase E1-E2 type family prote...		Lus10006881 [exp]	5.3	0.8746
AT5G42140			Regulator of chromosome conden...		Lus10042800 [exp]	5.4	0.8117
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Lus10028286 [exp]	20.8	0.8505
AT3G63460		EMB2221	transducin family protein / WD...		Lus10016373 [exp]	24.2	0.8627
AT4G39420			unknown protein		Lus10030711 [exp]	24.4	0.8625
AT4G23460			Adaptin family protein (.1)		Lus10024654 [exp]	27.7	0.8441
AT4G39420			unknown protein		Lus10006813 [exp]	33.0	0.8291
AT3G50370			unknown protein		Lus10019351 [exp]	34.5	0.8612

Compare expression of checked genes

Lus10021468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.