Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28370 242 / 2e-82 Uncharacterised protein family (UPF0497) (.1) AT2G37200 174 / 1e-55 Uncharacterised protein family (UPF0497) (.1) AT3G53850 114 / 2e-32 Uncharacterised protein family (UPF0497) (.1) AT3G23200 109 / 1e-30 Uncharacterised protein family (UPF0497) (.1) AT5G02060 93 / 3e-24 Uncharacterised protein family (UPF0497) (.1) AT3G50810 78 / 2e-18 Uncharacterised protein family (UPF0497) (.1) AT4G37235 68 / 1e-14 Uncharacterised protein family (UPF0497) (.1) AT1G49405 50 / 5e-08 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000718 [exp] 306 / 2e-107 AT2G28370 254 / 2e-87 Uncharacterised protein family (UPF0497) (.1) Lus10041312 [exp] 275 / 2e-95 AT2G28370 258 / 9e-89 Uncharacterised protein family (UPF0497) (.1) Lus10037399 [exp] 266 / 1e-91 AT2G28370 259 / 4e-89 Uncharacterised protein family (UPF0497) (.1) Lus10004698 [exp] 100 / 7e-27 AT3G53850 213 / 6e-72 Uncharacterised protein family (UPF0497) (.1) Lus10040264 [exp] 96 / 3e-23 AT3G55610 486 / 1e-165 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10022188 [exp] 84 / 1e-20 AT3G23200 206 / 3e-69 Uncharacterised protein family (UPF0497) (.1) Lus10021202 [exp] 72 / 6e-15 AT1G06620 202 / 2e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10024355 [exp] 68 / 6e-15 AT3G53850 147 / 7e-47 Uncharacterised protein family (UPF0497) (.1) Lus10010881 [exp] 68 / 1e-14 AT3G53850 143 / 2e-44 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G014600 [exp] 256 / 4e-88 AT2G28370 256 / 2e-88 Uncharacterised protein family (UPF0497) (.1) Potri.004G211400 [exp] 244 / 2e-83 AT2G28370 221 / 2e-74 Uncharacterised protein family (UPF0497) (.1) Potri.016G090100 [exp] 207 / 1e-68 AT2G28370 216 / 3e-72 Uncharacterised protein family (UPF0497) (.1) Potri.006G090400 [exp] 110 / 7e-31 AT3G53850 193 / 5e-64 Uncharacterised protein family (UPF0497) (.1) Potri.010G198700 [exp] 101 / 2e-27 AT3G53850 206 / 5e-69 Uncharacterised protein family (UPF0497) (.1) Potri.004G149332 [exp] 92 / 5e-24 AT3G50810 145 / 3e-45 Uncharacterised protein family (UPF0497) (.1) Potri.009G110200 [exp] 92 / 1e-23 AT3G50810 165 / 5e-53 Uncharacterised protein family (UPF0497) (.1) Potri.008G165500 [exp] 88 / 2e-22 AT3G23200 174 / 1e-56 Uncharacterised protein family (UPF0497) (.1) Potri.010G073000 [exp] 85 / 5e-21 AT3G23200 182 / 7e-60 Uncharacterised protein family (UPF0497) (.1) Potri.007G033600 [exp] 56 / 4e-10 AT4G37235 133 / 1e-40 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10021469 pacid=23179182 polypeptide=Lus10021469 locus=Lus10021469.g ID=Lus10021469.BGIv1.0 annot-version=v1.0 ATGAGTGTGAGCCATGCATCGATTCATCCGGTGGACGATCCTTCTCCGACAACTGAAGGCGGGAACAACAACAACGACGACAATGACATCAACGCTCCGG CGAGAGTTCGGATGAAGGATATACAAGGGATGCCGGGGACGAAAGTCGGACTCGTCTTGCGAGTGGCTCAGTTCTTCTTCGCGGCTGCTGCTCTTGTCGT CATGGCCACCACTAGCGATTTCCCTTCAGTCACTGCCTTCTGCTACCTTGTTGCAGCCGCTGGGTTGCAGTGCTTGTGGAGCCTTTCGCTAGCCGTTGTT GATATATATGCTCTTTTAGTGCTGCGGTCATTGCAGAATCATCAAGTTGTCTGCTTGTTCGCAATTGGCGATGGGGTCACTTCGACCCTCACATTCGCAG CAGCATGTGCATCTGCAGGGATCACAGTCCTGATCGATAACGACCTCGATAACTGTGCAAAGAACCACTGCATACAGTTTGAAACCGCTACAGCAATGGC ATTCATCAGCTGGTTCATCACATTGCCATCTTTTCTCTTGAACTTTTGGTCCCTCGCTTCGAGGTAG
AA sequence Show only first row Show all	>Lus10021469 pacid=23179182 polypeptide=Lus10021469 locus=Lus10021469.g ID=Lus10021469.BGIv1.0 annot-version=v1.0 MSVSHASIHPVDDPSPTTEGGNNNNDDNDINAPARVRMKDIQGMPGTKVGLVLRVAQFFFAAAALVVMATTSDFPSVTAFCYLVAAAGLQCLWSLSLAVV DIYALLVLRSLQNHQVVCLFAIGDGVTSTLTFAAACASAGITVLIDNDLDNCAKNHCIQFETATAMAFISWFITLPSFLLNFWSLASR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28370			Uncharacterised protein family...		Lus10021469 [exp]	0	1
AT3G29010			Biotin/lipoate A/B protein lig...		Lus10017321 [exp]	11.0	0.8000
AT3G47610			transcription regulators;zinc ...		Lus10023596 [exp]	14.6	0.8308
AT5G18610			Protein kinase superfamily pro...		Lus10036499 [exp]	20.7	0.7440
AT4G27750		ISI1	IMPAIRED SUCROSE INDUCTION 1, ...		Lus10017985 [exp]	32.3	0.7873
AT3G19990			unknown protein		Lus10017359 [exp]	34.2	0.7742
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Lus10040492 [exp]	56.6	0.7496
AT1G21840		UREF	urease accessory protein F (.1...		Lus10027319 [exp]	61.0	0.7801
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Lus10029780 [exp]	63.2	0.7327
AT5G18540			unknown protein		Lus10002878 [exp]	68.6	0.7725
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Lus10010899 [exp]	70.4	0.7621

Compare expression of checked genes

Lus10021469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.