Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28380 331 / 9e-110 DRB2 dsRNA-binding protein 2 (.1) AT3G26932 209 / 1e-63 DRB3 dsRNA-binding protein 3 (.1.2) AT5G41070 211 / 2e-63 DRB5 dsRNA-binding protein 5 (.1) AT3G62800 93 / 1e-20 DRB4 double-stranded-RNA-binding protein 4 (.1.2.3) AT1G09700 62 / 5e-10 DRB1, HYL1 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000721 [exp] 722 / 0 AT2G28380 442 / 3e-153 dsRNA-binding protein 2 (.1) Lus10035176 [exp] 218 / 6e-66 AT5G41070 321 / 4e-107 dsRNA-binding protein 5 (.1) Lus10032007 [exp] 217 / 8e-66 AT5G41070 320 / 8e-107 dsRNA-binding protein 5 (.1) Lus10041311 [exp] 214 / 9e-66 AT2G28380 191 / 1e-57 dsRNA-binding protein 2 (.1) Lus10003362 [exp] 75 / 3e-15 AT2G28380 116 / 1e-30 dsRNA-binding protein 2 (.1) Lus10008422 [exp] 74 / 8e-14 AT5G17920 1389 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10002619 [exp] 66 / 4e-11 AT3G62800 162 / 6e-46 double-stranded-RNA-binding protein 4 (.1.2.3) Lus10008862 [exp] 54 / 2e-07 AT1G09700 237 / 1e-70 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) Lus10023248 [exp] 54 / 3e-07 AT1G09700 232 / 1e-68 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G063700 [exp] 227 / 1e-68 AT5G41070 322 / 2e-106 dsRNA-binding protein 5 (.1) Potri.001G325300 [exp] 221 / 1e-66 AT3G26932 313 / 2e-103 dsRNA-binding protein 3 (.1.2) Potri.013G032400 [exp] 209 / 2e-61 AT5G41070 266 / 9e-84 dsRNA-binding protein 5 (.1) Potri.005G045700 [exp] 201 / 4e-58 AT3G26932 258 / 6e-81 dsRNA-binding protein 3 (.1.2) Potri.013G061500 [exp] 85 / 2e-17 AT3G62800 162 / 3e-45 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.019G038226 [exp] 81 / 8e-17 AT3G62800 146 / 1e-41 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.019G038184 [exp] 80 / 2e-16 AT3G62800 145 / 5e-41 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.009G152900 [exp] 81 / 4e-16 AT3G26932 118 / 4e-29 dsRNA-binding protein 3 (.1.2) Potri.019G037900 [exp] 76 / 3e-14 AT3G62800 151 / 8e-40 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.017G126700 [exp] 71 / 4e-13 AT1G09700 121 / 5e-30 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [flax] [poplar] DSRM PF00035 [flax] [poplar] dsrm Double-stranded RNA binding motif
Representative CDS sequence Show only first row Show all	>Lus10021471 pacid=23179208 polypeptide=Lus10021471 locus=Lus10021471.g ID=Lus10021471.BGIv1.0 annot-version=v1.0 ATGTACAAGAACCAGCTCCAGGAGCTGGCCCAGCGGAGCTGCTTCAACCTCCCTGCCTACACTTCGATAAGGGAAGGTCCTGACCACGCGCCGCGGTTCA AGGCCACCGTCAATTTCAACGGCGAGGTCTTCGAATGTCCTCACTACTGTACCACTCTCCGACAGGCTGAGCACTCCGCCGCCGAAGTCGCTCTCAACTC CCTCTCCCACCGCGGCCCTTCTCACTCCCTCGCCGCCCGCATTCTGGATGAAACAGGGGTATACAAGAACCTACTACAGGAAAACAAGAACCTACTGCAG GAAATTGCTCAGAGAGTCGGTGCTCCGTTGCCACAATACACGACGTTTAGGTCAGGTCTCGGCCACCAGCCAGTGTTTACTGGGATCGTAGAATTGGCGG GAATTTCGTTCACTGGCGATGCTGCCAAGAACAAAAAGCAAGCAGAGAAGAATGCTGCAATGGCTGCTTGGTCCTCCCTAAAACAATTGGCAAAGGAAGA GTCGAGTTCATCATCTGAACCAGAGAACACCGACGAGCTCGAGCAGATAACAATAGCACGGGCCTTGCTGAATTACCGTAAGAAGGAAAGAATGGCACAG GCAAACTCCCCAAATGCACCGATTCCTTTCCAGATGAAGTTTCCACCTCAAAACACTAGACCAACTAGTCCCCAACCTGCTCCTGCAGCAACCTCGAGAA TCCTTCCGCTAATCTATCCGAAGCCAACTCGAAATAGACCGATGGTAGCCCCCGACAGACATCAGTACTCCAGATCCACCTCAGCTACACCAAATGACAG GTTTGCCCCTCCCAGACCCACAAATGACCGGCACGTACCGGCTAGACAGCCGAATGTGCTTGATCTCTGGGCGCATCAGCCTCAGCCATATATCCCAATG CAGCCATTCGGCCAAACTTGCCGCTCCACTGTTCAGCCAGTGACCATAAGACATGCAGTACCATGCTACGCCGCACCTCCACAGCGTCCTATGGTGGTCC CCTCTCACTCGGTTCGAGCGCCACTCATCGGCCGTAATGTCATGCCCGTGACCATAAGGCAGGCTGTGCCGGTCTTTGCTGCTCCTCCCCCTTCAGTCCA TAAGGTAGATTCCCCGACCATGCAGAAGGACTCAATCGAATCCAAGAAAGATTTGTCTGTTGAATTCAAGCAACAGGAATCCAAGAAAGACTACCCTGTC GAATTCAAGCAAGAGGAACCCAAGAAAGAGGAATCCAAAGATTCTATGGAATCCAAGCAAGAGGGTGCAATCCCGGTCGCAGTAATCCCAGCTCAGGTGG AGGAAGAGAAGCAGCAAATAGCGAACTGTACGACCGAAGTGAAGGAGTCGTCAAAGGTCGAAGCAAGCTTGGAGAAACTGAAGATCTGA
AA sequence Show only first row Show all	>Lus10021471 pacid=23179208 polypeptide=Lus10021471 locus=Lus10021471.g ID=Lus10021471.BGIv1.0 annot-version=v1.0 MYKNQLQELAQRSCFNLPAYTSIREGPDHAPRFKATVNFNGEVFECPHYCTTLRQAEHSAAEVALNSLSHRGPSHSLAARILDETGVYKNLLQENKNLLQ EIAQRVGAPLPQYTTFRSGLGHQPVFTGIVELAGISFTGDAAKNKKQAEKNAAMAAWSSLKQLAKEESSSSSEPENTDELEQITIARALLNYRKKERMAQ ANSPNAPIPFQMKFPPQNTRPTSPQPAPAATSRILPLIYPKPTRNRPMVAPDRHQYSRSTSATPNDRFAPPRPTNDRHVPARQPNVLDLWAHQPQPYIPM QPFGQTCRSTVQPVTIRHAVPCYAAPPQRPMVVPSHSVRAPLIGRNVMPVTIRQAVPVFAAPPPSVHKVDSPTMQKDSIESKKDLSVEFKQQESKKDYPV EFKQEEPKKEESKDSMESKQEGAIPVAVIPAQVEEEKQQIANCTTEVKESSKVEASLEKLKI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10021471 [exp]	0	1
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Lus10015692 [exp]	2.0	0.8491
AT1G53900			Eukaryotic translation initiat...		Lus10037452 [exp]	2.2	0.8234
AT5G27990			Pre-rRNA-processing protein TS...		Lus10006795 [exp]	3.5	0.8395
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10013814 [exp]	3.5	0.8370
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10009275 [exp]	4.9	0.8204
AT5G63610		HEN3, CDKE;1, C...	HUA ENHANCER 3, cyclin-depende...		Lus10023050 [exp]	8.4	0.7932
AT3G09070			Protein of unknown function (D...		Lus10027785 [exp]	11.5	0.8322
AT3G13677			unknown protein		Lus10015813 [exp]	11.8	0.7857
AT5G18110		NCBP	novel cap-binding protein (.1)		Lus10020282 [exp]	12.0	0.7558
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Lus10004261 [exp]	13.4	0.7635

Compare expression of checked genes

Lus10021471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.