Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28390 605 / 0 SAND family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000722 [exp] 1048 / 0 AT2G28390 656 / 0.0 SAND family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G014400 [exp] 648 / 0 AT2G28390 740 / 0.0 SAND family protein (.1) Potri.004G211200 [exp] 385 / 9e-126 AT2G28390 739 / 0.0 SAND family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10021472 pacid=23179196 polypeptide=Lus10021472 locus=Lus10021472.g ID=Lus10021472.BGIv1.0 annot-version=v1.0 ATGTCATCTTCCGATTCCAGCTCCTCTTCCTCCACCTTGGACGGTAGAAACCCTGATCAGAAATCACAGCTTCTCGAGACCCAATTCCAGTCGGCGGTTA CAGTCGAAGACTCCGACAGAGAGGAATTAGCGTCTGTGAACCACCTCCAGCAGGGAGTGGAGGATACGGGGAATGGAGCGATCGGTGATGAATTCGTCAA TGTCGAGGAAGACAATCGCCGTGAGAGCAGCGATCGTGAGGAGAGAAATGCCGTCGAAGAGGCTGGGGATGGGAGTGGAGCTGAAGGTTTTGACGGGTGC AGGAGCAATTCGGAGCTGGAACCGGAGAGGGAATTGCCGGAAAGTGAGGTTGTCAATGTAGTGGACGACAGTCGTCGGGAGAGCAGCTACAAGGAGGAGA TGAATGCAATTAATGAGGCTGGGGACGGGAATGGAGTTGAAGGTTTGGAGAGGAGTAGGGGGATGTCGGAGCTGGAAGTGGAGGCGAAGGAGCCGGAGGG GGGAGATCAGGCAAGTGGCGTAGTCAATGTAGAGGAGAGAAATGCAGTCGAGGAGGCTGGGGATGGAGTCGGAGGTTTCGTTTGGAGGAGGACGAATTCG GAGGCGGATGTAGAGGCAGAGGCGCCGGCGAGTCCGAGCAGTAGTGGATATGCCGGCGAGAGAGGGAGCAGCAGTGGAACTAGTGGTTCGAGGAGGGATG GAGAAGCCAGTGAAGATGAGATACTAGAGGTTGGAAATGATGGCGTTGATGGTGGAGGCGTTGATGGCGCTCTCGACTCTCAAGCTGAATGGACTCCTGG GAAACGGCATGTTAATGAGGACGATGCTTCAATTTCATGGAGAAAGAGGAAGAAACATTTTTTCGTACTGAGCAATTCTGGGAAACCTATATATTCAAGA TATGGGGATGAGCACAAACTGGCTGGATTCTCAGCAACACTGCAAGCCATCATATCTTTTGTGGAGAACGGGGGAGATCGAGTCAAGTATGTCAGGGCAG GCATGCACCAGGTGGTTTTCCTAGTCAAAGGACCAATCTACCTTGTATGCATCAGCTGTACAGAAGAACTGTATGAGTCACTCAATGGACAACTGGAGCT TCTCTATGGTCAGATGATTCTCATTTTGACCAAATCATTGAATAGATGTTTTGAGAAAAACCCAAAGTTTGACATGACACCTTTGCTCAGAGGAACGGAT GATGTCTTCTCTTCTCTGATCCACTCGTTTAGCTGGAATCCAGCCACGTTTCTTCGTGCATACACGTGTCTTCCTCTTCCTTACGCGACAAGACAAGCTG CAGGTGCTATATTGCAAGATGTTGCGGATTCTGGTGTCCTCTTCGCGTTATTAATGTGTAAACATAGAGTTGATACTTACCTGATATTGCTAACAACCCG TTCAGATGCGTTCTACCATTTGAAAGATTGTCGGATTCGCGTGGAAACGGTTCTCGTGAAGTCAAATGTTCTTAGCGAAGTTCAGAGATCCGTACTAGAC GGTGGAATGCGCGTTGAGGATTTATCCGGCGATCTCTTGTTAGGGGCTGGATCTATTTCTCGTGTTGGACAGGATAACATAACGATTCAGACTCCAGAAA GAATACGGGAGTCGTGTGTTGTTGGCATGGGCGGTCCTGCTGGACTCTGGCATTTCTTGTACCGTAGCGTATATCTCGATCAGTATGTATCTTCCGAGTT TTCGTCGCCCATTAATACTCGGCAACAACAGAAGAGATTATACAGAGCATACCAGAAGCTTTATGTCTCAATGCATAGCAAAGGAACCGGACCTCACAAA ACCCAGTTCCGAAGAGACGAGAGCTACGTTCTACTCTGTTGGGTGACCCCAGATTTCGAACTGTACGCAGCATTCGATCCACTTGCAGACAAGGCTTTGG CGATCAAGACGTGCAACAAGGTGTGCCAATGGGTGAAAGATGTAGAGAATGAGATCTTTCTGATGGGAGCTAGCCCCTTCTCCTGGTGA
AA sequence Show only first row Show all	>Lus10021472 pacid=23179196 polypeptide=Lus10021472 locus=Lus10021472.g ID=Lus10021472.BGIv1.0 annot-version=v1.0 MSSSDSSSSSSTLDGRNPDQKSQLLETQFQSAVTVEDSDREELASVNHLQQGVEDTGNGAIGDEFVNVEEDNRRESSDREERNAVEEAGDGSGAEGFDGC RSNSELEPERELPESEVVNVVDDSRRESSYKEEMNAINEAGDGNGVEGLERSRGMSELEVEAKEPEGGDQASGVVNVEERNAVEEAGDGVGGFVWRRTNS EADVEAEAPASPSSSGYAGERGSSSGTSGSRRDGEASEDEILEVGNDGVDGGGVDGALDSQAEWTPGKRHVNEDDASISWRKRKKHFFVLSNSGKPIYSR YGDEHKLAGFSATLQAIISFVENGGDRVKYVRAGMHQVVFLVKGPIYLVCISCTEELYESLNGQLELLYGQMILILTKSLNRCFEKNPKFDMTPLLRGTD DVFSSLIHSFSWNPATFLRAYTCLPLPYATRQAAGAILQDVADSGVLFALLMCKHRVDTYLILLTTRSDAFYHLKDCRIRVETVLVKSNVLSEVQRSVLD GGMRVEDLSGDLLLGAGSISRVGQDNITIQTPERIRESCVVGMGGPAGLWHFLYRSVYLDQYVSSEFSSPINTRQQQKRLYRAYQKLYVSMHSKGTGPHK TQFRRDESYVLLCWVTPDFELYAAFDPLADKALAIKTCNKVCQWVKDVENEIFLMGASPFSW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28390			SAND family protein (.1)		Lus10021472 [exp]	0	1
AT3G62330			Zinc knuckle (CCHC-type) famil...		Lus10025019 [exp]	2.8	0.7581
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10025213 [exp]	8.7	0.7544
AT4G36980			unknown protein		Lus10019346 [exp]	17.1	0.7212
AT3G45940			Glycosyl hydrolases family 31 ...		Lus10000778 [exp]	19.2	0.6522
AT3G03940			Protein kinase family protein ...		Lus10024261 [exp]	21.3	0.7133
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10019710 [exp]	28.5	0.6567
AT1G43900			Protein phosphatase 2C family ...		Lus10042775 [exp]	30.6	0.7056
AT3G26100			Regulator of chromosome conden...		Lus10006455 [exp]	35.3	0.6873
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10030163 [exp]	36.6	0.7063
					Lus10019108 [exp]	39.4	0.6615

Compare expression of checked genes

Lus10021472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.