Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72100 241 / 1e-73 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) AT1G22600 135 / 4e-35 Late embryogenesis abundant protein (LEA) family protein (.1) AT3G62580 50 / 8e-07 Late embryogenesis abundant protein (LEA) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000723 [exp] 745 / 0 AT1G72100 305 / 3e-98 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10041310 [exp] 128 / 3e-33 AT1G72100 144 / 9e-40 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10037401 [exp] 106 / 4e-26 AT1G72100 127 / 5e-34 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10025037 [exp] 51 / 4e-07 AT3G62580 341 / 7e-121 Late embryogenesis abundant protein (LEA) family protein (.1) Lus10010016 [exp] 51 / 5e-07 AT3G62580 340 / 3e-120 Late embryogenesis abundant protein (LEA) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G197800 [exp] 50 / 1e-06 AT3G62580 352 / 6e-125 Late embryogenesis abundant protein (LEA) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021473 pacid=23179218 polypeptide=Lus10021473 locus=Lus10021473.g ID=Lus10021473.BGIv1.0 annot-version=v1.0 ATGACCAACATTTTCGCAATCTGCCTTGTGCTCACCACAATGCTGGCCGCGGATATCTGGTCTCCTCCTCCGGCACGATCGACGGTAGCCACCACTGGTG ATCATCAAGACGTCATAGTGAAGGAAGGTCACCGTGTCGTGGTCGTTGAGACTTTCGATGACCACGGCCACCACAACACCAAAGTGTCCATCTCCCCATC CAAAGGAGGGGAGGAGGATGAATCCGGATCCGCTCTGCCGATTTTTGGCAGACCGCATCAGGCTAGTAGCGACGACACAACCCGTTCCCCAAGGGAGCTC GTGTGTGATTCCCTTGGGAAATGCACACACAAGATAGCTAAGACCATCAGTGACGCTAAGGATCGAGTCTCGGGGAAGGCCTCCGAAGTGGCCGAGGGAG CCAAACATGGAATATCCGACACGGTGCATCAAGCCTCGGAGATGGCCGAGGGGGCTAAACACGGAATCTCTGGCTCCGCGGAGAAGGCGGCAGAGCTTGC TCACGAAGCTAAAGATAAAGTGAATAGAGCTACACAGCAAGCTACTGGGAAGGCTACAGAGTATGCACATCAGACGAAAGACCTTGTCTCCGAAACCGCA GAGAAGGCCTCCGAGAAGGCGTCTGAGGTTGCTCACGGTGCCAAAGACCGGATCTATGGAACTGCGGAGAAAGCTTCCGGAAAGGCGTCGGAAGCATTCG ACAAAGGAAGCGAATTCGCGTCCCAAGCTAAAGACAAAGCAGGGGAGGCAGCAAAGGGAGTATACTCGAAAGCCAAAGATTCGGCCGCCCGGTCAACCGA ACAAGTCAAAGAGACCTTGACTGACGCCTCGGATAAGGCGAAATCGGCTGCCAAGTCAACCAAGGACGTCGGGAAAACCATAGGGAAAGACGTGACACGT AACGTCACGATGGGAGCCTTTGATGACATCAAGCCACCAAAGAAGCAGACGTTGGCCGGGTCGGTGGCTTCGTGGTTGAAGGGAATGCTGTGCGTGCTGA ACATGTTGGGTTCAGCCACAGCTTACGGGATGAGCGTGTGGGTGACTTTCATTTCTAGCTACATGCTAGCCTCGATCCTGCCGAGGCAGCAGCTAGGAAT GGCGCAGAGTAAAATATACCCTGTTTACTTCAGAGCGCAGAGCTTGTCGATAGGGGTAGCTCTGCTCGCCCATTTGCTGAGGCAATGGAGTACCTTGTTG TCTTCAAAGTCCGAAATGCTTCAGGCATTCAATCTATTGTTTGCTATCTTGCTCGTCGGTGTTAACGGTCTCTATGTCGAGCCCCTTGCCACTAAGGCGA TGTTCGAGAGGTTGAGGATGGAGAAGGAAGAAGGGAGGGGGAGGGAGCAGGAGACGCAGCAGCATCAACTGGCGGATGCAGGGCCAGCTGCGGCAGGAGC TGAGCTGACGGACGAGGAGACGACGAGGAGGATGGCGGGACTGAACGAAAGAGTGAAGAAGATGAACTTGTACTCGTCGTACCTCAACATTGCGTCGGTA ATGTCTCTCACTTGGCACCTTGTTCATTTGGGACACAACCTCCATGTGGGTTCATCACAGTGA
AA sequence Show only first row Show all	>Lus10021473 pacid=23179218 polypeptide=Lus10021473 locus=Lus10021473.g ID=Lus10021473.BGIv1.0 annot-version=v1.0 MTNIFAICLVLTTMLAADIWSPPPARSTVATTGDHQDVIVKEGHRVVVVETFDDHGHHNTKVSISPSKGGEEDESGSALPIFGRPHQASSDDTTRSPREL VCDSLGKCTHKIAKTISDAKDRVSGKASEVAEGAKHGISDTVHQASEMAEGAKHGISGSAEKAAELAHEAKDKVNRATQQATGKATEYAHQTKDLVSETA EKASEKASEVAHGAKDRIYGTAEKASGKASEAFDKGSEFASQAKDKAGEAAKGVYSKAKDSAARSTEQVKETLTDASDKAKSAAKSTKDVGKTIGKDVTR NVTMGAFDDIKPPKKQTLAGSVASWLKGMLCVLNMLGSATAYGMSVWVTFISSYMLASILPRQQLGMAQSKIYPVYFRAQSLSIGVALLAHLLRQWSTLL SSKSEMLQAFNLLFAILLVGVNGLYVEPLATKAMFERLRMEKEEGRGREQETQQHQLADAGPAAAGAELTDEETTRRMAGLNERVKKMNLYSSYLNIASV MSLTWHLVHLGHNLHVGSSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72100			late embryogenesis abundant do...		Lus10021473 [exp]	0	1
AT1G04560			AWPM-19-like family protein (....		Lus10033541 [exp]	69.6	0.4837
					Lus10030974 [exp]	93.0	0.4844
AT4G00755			F-box family protein (.1.2)		Lus10041367 [exp]	97.0	0.4395
AT2G22680		WAVH1	WAV3 homolog 1, Zinc finger (C...		Lus10039634 [exp]	164.0	0.4779

Compare expression of checked genes

Lus10021473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.