Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60680 119 / 3e-34 Protein of unknown function, DUF584 (.1) AT3G45210 117 / 7e-34 Protein of unknown function, DUF584 (.1) AT2G28400 105 / 4e-29 Protein of unknown function, DUF584 (.1) AT5G03230 102 / 1e-27 Protein of unknown function, DUF584 (.1) AT4G21970 78 / 1e-18 Protein of unknown function, DUF584 (.1) AT4G04630 75 / 3e-17 Protein of unknown function, DUF584 (.1) AT1G11700 70 / 4e-15 Protein of unknown function, DUF584 (.1) AT4G21930 70 / 5e-15 Protein of unknown function, DUF584 (.1) AT1G61930 65 / 5e-13 Protein of unknown function, DUF584 (.1) AT1G29640 59 / 2e-11 Protein of unknown function, DUF584 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000724 [exp] 228 / 4e-77 AT3G45210 111 / 1e-31 Protein of unknown function, DUF584 (.1) Lus10041309 [exp] 152 / 3e-47 AT5G60680 137 / 5e-42 Protein of unknown function, DUF584 (.1) Lus10019936 [exp] 104 / 1e-28 AT5G03230 99 / 1e-26 Protein of unknown function, DUF584 (.1) Lus10026507 [exp] 99 / 3e-25 AT5G03230 97 / 1e-24 Protein of unknown function, DUF584 (.1) Lus10006775 [exp] 81 / 5e-20 AT1G61930 110 / 4e-32 Protein of unknown function, DUF584 (.1) Lus10015087 [exp] 82 / 9e-20 AT5G03230 87 / 6e-22 Protein of unknown function, DUF584 (.1) Lus10020047 [exp] 79 / 9e-19 AT1G61930 124 / 8e-36 Protein of unknown function, DUF584 (.1) Lus10002073 [exp] 80 / 2e-18 AT1G61930 156 / 5e-48 Protein of unknown function, DUF584 (.1) Lus10006781 [exp] 74 / 2e-16 AT4G21970 128 / 6e-38 Protein of unknown function, DUF584 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G014100 [exp] 154 / 7e-48 AT3G45210 124 / 2e-36 Protein of unknown function, DUF584 (.1) Potri.004G211100 [exp] 144 / 8e-44 AT5G60680 120 / 1e-34 Protein of unknown function, DUF584 (.1) Potri.016G089900 [exp] 100 / 5e-27 AT5G03230 115 / 6e-33 Protein of unknown function, DUF584 (.1) Potri.006G127900 [exp] 100 / 7e-27 AT5G03230 122 / 1e-35 Protein of unknown function, DUF584 (.1) Potri.011G004100 [exp] 79 / 2e-18 AT4G04630 125 / 1e-36 Protein of unknown function, DUF584 (.1) Potri.004G015700 [exp] 79 / 2e-18 AT1G11700 151 / 5e-46 Protein of unknown function, DUF584 (.1) Potri.011G003300 [exp] 75 / 9e-17 AT1G11700 161 / 6e-50 Protein of unknown function, DUF584 (.1) Potri.004G014000 [exp] 73 / 2e-16 AT4G04630 124 / 4e-36 Protein of unknown function, DUF584 (.1) Potri.016G076300 [exp] 65 / 7e-13 AT3G15040 90 / 9e-22 Protein of unknown function, DUF584 (.1) Potri.011G076900 [exp] 56 / 2e-10 AT1G29640 90 / 4e-24 Protein of unknown function, DUF584 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04520 [flax] [poplar] Senescence_reg Senescence regulator
Representative CDS sequence Show only first row Show all	>Lus10021474 pacid=23179192 polypeptide=Lus10021474 locus=Lus10021474.g ID=Lus10021474.BGIv1.0 annot-version=v1.0 ATGGCAGCCAGTAAGAGCTACTTCGCCAGACAGAACAACTACCGATTCCTCTCCGCCGACCACCACCACCATCACCACACCCACGACTCCTCCATCTTCG AACTCGACGAGTCAGACCTCTACGGTCACCACAACCACCACCACCGCTCTGAGTCGCCGGAGTTCCGTATGACCGGGTCAAGGATCAGTAAGAAGTCGTC GTCGGCTGCCATGGTGGTGGCGGCAGGAGGTAACCGCGCCGCCGCGTCGTCACTGCCGGTCAACATACCGGACTGGTCGAAGATACTGAAGGAGGAGTAC CGAGACAATCGCCGGAGAGATCAGGACGACGAGGATGACGACGACGACGTGGCTTTCAACGGCGACAGCGGTGAGGATTACTTCGACGGAGGCGGAATGA GAGTTCCGCCGCACGAGCTGCTGGCGAGGACGAGGATCGCGTCGTTCTCCGTCCATGAAGGGATAGGGAGGACTTTGAAAGGGAGGGATCTGAGCAGGGT CCGGAATGCAATTTGGGAGAAAACTGGGTTCCAAGACTGA
AA sequence Show only first row Show all	>Lus10021474 pacid=23179192 polypeptide=Lus10021474 locus=Lus10021474.g ID=Lus10021474.BGIv1.0 annot-version=v1.0 MAASKSYFARQNNYRFLSADHHHHHHTHDSSIFELDESDLYGHHNHHHRSESPEFRMTGSRISKKSSSAAMVVAAGGNRAAASSLPVNIPDWSKILKEEY RDNRRRDQDDEDDDDDVAFNGDSGEDYFDGGGMRVPPHELLARTRIASFSVHEGIGRTLKGRDLSRVRNAIWEKTGFQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60680			Protein of unknown function, D...		Lus10021474 [exp]	0	1
AT3G45210			Protein of unknown function, D...		Lus10000724 [exp]	2.4	0.8298
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10017633 [exp]	12.2	0.8038
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10018737 [exp]	12.8	0.8042
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Lus10031526 [exp]	15.6	0.7815
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10031434 [exp]	16.1	0.8085
AT3G47300		SELT	SELT-like protein precursor (....		Lus10002479 [exp]	18.5	0.7765
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Lus10028997 [exp]	19.0	0.7756
AT5G23680			Sterile alpha motif (SAM) doma...		Lus10036012 [exp]	19.2	0.7433
AT2G29900		PS2	Presenilin-2 (.1)		Lus10031966 [exp]	19.7	0.7897
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10033850 [exp]	20.1	0.7703

Compare expression of checked genes

Lus10021474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.