Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60660 265 / 4e-89 PIP2F, PIP2;4 plasma membrane intrinsic protein 2;4 (.1) AT3G53420 253 / 3e-84 PIP2;1, PIP2A PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) AT2G37170 253 / 3e-84 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT3G54820 252 / 7e-84 PIP2D, PIP2;5 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) AT2G39010 251 / 9e-84 PIP2E, PIP2;6 PLASMA MEMBRANE INTRINSIC PROTEIN 2;6, plasma membrane intrinsic protein 2E (.1) AT4G35100 251 / 1e-83 SIMIP, PIP3A, PIP2;7, PIP3 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) AT2G16850 247 / 4e-82 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT2G37180 247 / 5e-82 PIP2C, PIP2;3, RD28 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) AT1G01620 225 / 3e-74 TMP-B, PIP1C, PIP1;3 PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, plasma membrane intrinsic protein 1C (.1.2) AT4G23400 227 / 4e-74 PIP1D, PIP1;5 plasma membrane intrinsic protein 1;5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022577 [exp] 355 / 9e-126 AT4G00430 248 / 3e-83 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Lus10041397 [exp] 310 / 7e-107 AT3G53420 412 / 6e-147 PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) Lus10026504 [exp] 281 / 9e-97 AT5G60660 358 / 1e-126 plasma membrane intrinsic protein 2;4 (.1) Lus10015083 [exp] 279 / 3e-96 AT5G60660 290 / 2e-100 plasma membrane intrinsic protein 2;4 (.1) Lus10019934 [exp] 280 / 6e-95 AT2G37170 474 / 6e-171 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10023184 [exp] 272 / 1e-91 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10014978 [exp] 248 / 3e-82 AT2G16850 514 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10023515 [exp] 247 / 8e-82 AT3G54820 482 / 5e-174 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Lus10040399 [exp] 246 / 3e-81 AT3G54820 474 / 1e-170 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G128200 [exp] 274 / 1e-92 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.006G128000 [exp] 273 / 4e-92 AT2G37170 487 / 5e-176 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.009G013900 [exp] 271 / 2e-91 AT2G37170 458 / 8e-165 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.008G039600 [exp] 261 / 1e-87 AT3G53420 445 / 1e-159 PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) Potri.010G222700 [exp] 259 / 1e-86 AT3G54820 484 / 6e-175 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Potri.004G176300 [exp] 250 / 3e-83 AT4G35100 513 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.016G089500 [exp] 246 / 2e-81 AT2G37180 458 / 1e-164 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) Potri.009G136600 [exp] 243 / 2e-80 AT4G35100 493 / 1e-178 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.006G098100 [exp] 227 / 5e-74 AT4G00430 482 / 4e-174 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.016G113300 [exp] 226 / 1e-73 AT4G00430 524 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10021475 pacid=23179152 polypeptide=Lus10021475 locus=Lus10021475.g ID=Lus10021475.BGIv1.0 annot-version=v1.0 ATGATGGACAAAGAGATAGATAGCAATGTTTCATGCAAAGGGGGAAGATGTGAGGAGATAGGGACGTCGAAGCCGCCGATAAACCAGCCGCCGAGTTCTC ACGCAAGGACTACAACGACCCACCCCCCGCGCTCCTCAGCCAAGGACTACCACGACCCACCCCCGGCGCCCATCTTCGACCTCGAAGAGCTCACCAAATG GTCCTTCTACAGAGCCCTCATCGCCGAGTTCATCGCCACCCTCCTCTTCCTCTACATCACCGTCCTCACCGTCATCGGCTACAAGTCCCAGACTGACCCG CTCACCAACAAAGCCCTTGTGAAGGGGTTCCAAAAGGCTTACTATGTTAGGTATGGTGGTGGAGCTAATGAGCTGGCTAGTGGGTATAATAAGGGAACCG GTCTGGGTGCTGAGATTATCGGAACGTTCGTTTTGGTTTATACCGTTTTCTCGGCTACTGACCCCAAGAGAAGCGCCAGAGACTCCCATGTTCCTGTATT GGCACCACTTCCAATTGGGTTTGCAGTGTTCATGGTCCACTTGGCAACAATCCCAATCACTGGGACTGGAATCAACCCTGCCAGGAGTTTTGGTGCTGCT GTTATCTACAACCAAGACAAGGCTTGGGATGATCAGTGGATATTTTGGGTGGGGCCATTCATTGGAGCAGCAATAGCTGCTTTATACCACCAATACATCC TAAGAGCAGCAGCAATCAAGGCTTTGGGTTCATTCAGGAGCAATGCTTGA
AA sequence Show only first row Show all	>Lus10021475 pacid=23179152 polypeptide=Lus10021475 locus=Lus10021475.g ID=Lus10021475.BGIv1.0 annot-version=v1.0 MMDKEIDSNVSCKGGRCEEIGTSKPPINQPPSSHARTTTTHPPRSSAKDYHDPPPAPIFDLEELTKWSFYRALIAEFIATLLFLYITVLTVIGYKSQTDP LTNKALVKGFQKAYYVRYGGGANELASGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAA VIYNQDKAWDDQWIFWVGPFIGAAIAALYHQYILRAAAIKALGSFRSNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39010		PIP2E, PIP2;6	PLASMA MEMBRANE INTRINSIC PROT...		Lus10021475 [exp]	0	1
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10004202 [exp]	1.0	0.9336
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10003611 [exp]	1.4	0.9202
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10004318 [exp]	3.0	0.9059
AT5G65660			hydroxyproline-rich glycoprote...		Lus10002158 [exp]	4.0	0.8692
AT4G02090			unknown protein		Lus10010014 [exp]	4.2	0.8777
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10018549 [exp]	5.0	0.8104
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10022676 [exp]	6.0	0.8677
					Lus10025897 [exp]	6.0	0.9001
AT5G57240		ORP4C	OSBP(oxysterol binding protein...		Lus10040586 [exp]	6.7	0.8328
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10028761 [exp]	6.8	0.8153

Compare expression of checked genes

Lus10021475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.