Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60640 680 / 0 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT3G54960 600 / 0 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT3G16110 254 / 2e-77 ATPDI4, ATPDIL1-6 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) AT1G52260 249 / 2e-75 ATPDI3, ATPDIL1-5 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) AT1G21750 217 / 1e-63 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT1G77510 208 / 3e-60 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT2G47470 95 / 1e-21 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT1G04980 73 / 2e-13 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT1G35620 69 / 3e-12 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) AT2G32920 68 / 6e-12 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022581 [exp] 915 / 0 AT5G60640 741 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10037403 [exp] 776 / 0 AT5G60640 729 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10041307 [exp] 359 / 3e-117 AT5G60640 536 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10025792 [exp] 246 / 1e-75 AT3G16110 553 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) Lus10035870 [exp] 248 / 7e-75 AT1G52260 632 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) Lus10018156 [exp] 204 / 1e-58 AT1G21750 710 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10029681 [exp] 196 / 2e-55 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10042721 [exp] 192 / 9e-53 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10025679 [exp] 122 / 4e-30 AT1G21750 482 / 8e-169 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G013600 [exp] 743 / 0 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.001G183500 [exp] 261 / 8e-80 AT3G16110 650 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) Potri.008G040100 [exp] 232 / 1e-69 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.010G222100 [exp] 221 / 7e-66 AT3G54960 275 / 2e-87 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.002G082100 [exp] 211 / 2e-61 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.005G179000 [exp] 203 / 2e-58 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.014G122800 [exp] 98 / 5e-22 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.002G198300 [exp] 92 / 5e-20 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.019G082400 [exp] 82 / 2e-16 AT1G35620 549 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.013G111400 [exp] 72 / 4e-13 AT1G35620 533 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10021478 pacid=23179250 polypeptide=Lus10021478 locus=Lus10021478.g ID=Lus10021478.BGIv1.0 annot-version=v1.0 ATGGCGACGACTCGATATCTCCTCCTCCTAGCTCTCATCGCCTTCCTCCTCGTCTCCCCTTCCCTATCCAAACAACCCACTAACTCTCCGGATGATGACG ATGACGAGGACCTCAGCTTCCTTGAGGACGAGGCAGCTGATGCTGATCACACTGGATCTTCTTCCCTTCACGATTCCGATCACTTCGACCACGATGACGA GGACGCCGACTTCGATAACGAAGGAGGGGAAGACTTCGATAACTTCTCGGACTTCGACGACTCCGATTCCGATCCTTTCAAGCAGCCCGAGGTCGACGAG AAGGACGTCGTGGTACTGAACGAAGGGAATTTCAGTGATTTCGTTAAGGATCGTAAGTTCGTGCTGGTTGAGTTCTACGCCCCGTGGTGCGGCCACTGCC AGGCGCTCGCTCCAGAGTATGCTGCCGCGGCAACAGAGCTGAAGGCAGATGACGTGATACTGGCGAAAGTGGATGCAGCTGAGGAGAGCGAGTTGTCTCA GCTGTACGATGTGCAAGGGTATCCCACCTTGGTTTTCTTCGTTGATGGAGTTCACAAGCCTTACCCTGGTCAGAGGACCAAAGATGCTATTGTTACGTGG ATTAAGAAGAAGATTGGACCTGGAATCTCCAACATTACCACATTGGATGATGCAGAGCGGATTTTGACTTCTGAGAGCAAAGTCGCCTTGGCTTACCTTA GCTCATTATTGGGTTCTGAGAGTGACGAGCTTGCTGGTGCTTCAAGGATTGAAGACGATGTTAACTTCTATCAAACTGTTAACTCTGATGTCGCAAAGAT GTTCCATCTTGACCCTGAAGCTAAACGTCCTGCCCTGATCTTCATTAAGAAGGAGGCTGAGAAACTGAGTTATTTTGAGGGCAACTTCTCCAAGTCGGGT ATAGCCGAGTTTGTATTCGCGAACAAGCTTCCACTGGTCACTATTTTCACCAGGGAAAATGCTCCAGCGGTCTTCGAGAGTCAGATAAAAAAGCAGCTCA TTTTGTTTGCTACTAAAAACGATTCTGAGAGAGTTCTCTCACCGTTGCAAGAAGCTGCTAAAGCATTCAAGGGGAAGCTCATATGCGTATTTGTGGATAT GGAAAATGAAGATGTTGGAAAACCCGTCTCTGAATATTTCGGCATCACAACTTCCCCCAAGCTTATCGGTTATGCTGGAAATGAAGATGCAAAGAAATTC GTACTCGACAAGGAAGTTACTGTAGATAATATAAAGGCTTTTGGACAAGACTTCATTGAAGACAATCTGAAACCATTCTACAAGTCTGACCCAATTCCAG AAAATAATGATGGAGATGTCAAAATAGTGGTTGGAGACAACTTCGATGAAATCGTTTTGGACGAGTCGAAAGATGTTCTCCTTGAGATCTATGCACCTTG GTGTGGACATTGCCAGTCTCTAGAGCCAACCTACAACAAGCTCGCTAAACATTTACGGGACATTGATTCCATTGTTGTAGCTAAGATGGATGGCACGACG AATGAACACCCCAGAGCCAAGTCTGATGGGTTCCCGACGCTTCTGTTCTTCCCTGCCGGGAACAAGAGCTTCGATCCAATCACTGTAGACACAGACAGAA CCGTGATAGCATTTTACAAGTTCATCAAGAAGCATGCTTCCATCCCATTCAAGCTTCAAAAGCCGGCTCAAACGACAAATTCTCCAGCACCCGAAACTAA GAGCCCCGACGCTAAGGATGAATTGTGA
AA sequence Show only first row Show all	>Lus10021478 pacid=23179250 polypeptide=Lus10021478 locus=Lus10021478.g ID=Lus10021478.BGIv1.0 annot-version=v1.0 MATTRYLLLLALIAFLLVSPSLSKQPTNSPDDDDDEDLSFLEDEAADADHTGSSSLHDSDHFDHDDEDADFDNEGGEDFDNFSDFDDSDSDPFKQPEVDE KDVVVLNEGNFSDFVKDRKFVLVEFYAPWCGHCQALAPEYAAAATELKADDVILAKVDAAEESELSQLYDVQGYPTLVFFVDGVHKPYPGQRTKDAIVTW IKKKIGPGISNITTLDDAERILTSESKVALAYLSSLLGSESDELAGASRIEDDVNFYQTVNSDVAKMFHLDPEAKRPALIFIKKEAEKLSYFEGNFSKSG IAEFVFANKLPLVTIFTRENAPAVFESQIKKQLILFATKNDSERVLSPLQEAAKAFKGKLICVFVDMENEDVGKPVSEYFGITTSPKLIGYAGNEDAKKF VLDKEVTVDNIKAFGQDFIEDNLKPFYKSDPIPENNDGDVKIVVGDNFDEIVLDESKDVLLEIYAPWCGHCQSLEPTYNKLAKHLRDIDSIVVAKMDGTT NEHPRAKSDGFPTLLFFPAGNKSFDPITVDTDRTVIAFYKFIKKHASIPFKLQKPAQTTNSPAPETKSPDAKDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10021478 [exp]	0	1
AT2G45670			calcineurin B subunit-related ...		Lus10041384 [exp]	1.7	0.9444
AT5G15640			Mitochondrial substrate carrie...		Lus10035134 [exp]	2.4	0.9340
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Lus10014368 [exp]	2.4	0.9390
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10015862 [exp]	3.2	0.9296
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10033058 [exp]	4.0	0.9225
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031696 [exp]	4.5	0.9416
AT3G50120			Plant protein of unknown funct...		Lus10010064 [exp]	5.0	0.9360
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10022581 [exp]	7.1	0.9161
AT1G12640			MBOAT (membrane bound O-acyl t...		Lus10029595 [exp]	7.6	0.9153
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10027091 [exp]	9.5	0.9203

Compare expression of checked genes

Lus10021478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.