Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022582 [exp] 75 / 2e-17 AT3G45230 67 / 2e-14 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021479 pacid=23179156 polypeptide=Lus10021479 locus=Lus10021479.g ID=Lus10021479.BGIv1.0 annot-version=v1.0 ATGTCGGCCAAGTGTTCGATGCTAGTCTTCCTACTTCTCCCCTTCCTTTCACTCGCCCAGTCACCGAGTCTGTCTCCCGGATCATCACCATCTCCGTCGC CGGATTATGGATCACCGGCCTATTCGCCGTCGCCTATGTTCGATTCACCGCCAGAGGCTACTCCTTCTGATCTGATGAGAAATAGTCCTTCCTCTGCTCC AGCTCCAGCTCCAGCTCCGGCCAAATTAGCTCATGTGCCTGCTCCGAGCAAGAGCGAGTATGCGGCGGACATCGACGGTGAGGTGGTGAAGAGCGATGAC TCGACGGGGACGGGCGGCGGGAAGAAGGCTGGAATCGCTGTCGGGCTGGTGGCGGCGGTTTGCCTGGTGGGATTCGGTGGGATGATTTACCGGAAGAGGC AGGAGAATATCAGGAGGGCGCGTTACAGATACGTCGCCGAGACGGAACTGCTCGGAAGAAATACCGGACCTTACCCTTAA
AA sequence Show only first row Show all	>Lus10021479 pacid=23179156 polypeptide=Lus10021479 locus=Lus10021479.g ID=Lus10021479.BGIv1.0 annot-version=v1.0 MSAKCSMLVFLLLPFLSLAQSPSLSPGSSPSPSPDYGSPAYSPSPMFDSPPEATPSDLMRNSPSSAPAPAPAPAKLAHVPAPSKSEYAADIDGEVVKSDD STGTGGGKKAGIAVGLVAAVCLVGFGGMIYRKRQENIRRARYRYVAETELLGRNTGPYP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45230			hydroxyproline-rich glycoprote...		Lus10021479 [exp]	0	1
AT3G45230			hydroxyproline-rich glycoprote...		Lus10022582 [exp]	2.2	0.9215
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036114 [exp]	4.2	0.9017
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10027580 [exp]	6.6	0.8906
AT5G10770			Eukaryotic aspartyl protease f...		Lus10000265 [exp]	6.7	0.8875
AT5G62350			Plant invertase/pectin methyle...		Lus10031713 [exp]	6.9	0.8506
					Lus10041664 [exp]	7.7	0.8860
AT5G10770			Eukaryotic aspartyl protease f...		Lus10020099 [exp]	7.9	0.8932
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10022522 [exp]	8.8	0.8360
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002985 [exp]	8.9	0.8809
AT1G64380	AP2_ERF		Integrase-type DNA-binding sup...		Lus10001898 [exp]	9.2	0.8614

Compare expression of checked genes

Lus10021479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.