Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14180 848 / 0 ATPRD1 putative recombination initiation defect 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022584 [exp] 1613 / 0 AT4G14180 602 / 0.0 putative recombination initiation defect 1 (.1) Lus10003912 [exp] 146 / 4e-39 AT4G14180 68 / 8e-13 putative recombination initiation defect 1 (.1) Lus10002928 [exp] 75 / 4e-16 ND / Lus10028824 [exp] 79 / 1e-14 AT5G04410 378 / 5e-125 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10002081 [exp] 0 / 1 AT4G14180 53 / 3e-08 putative recombination initiation defect 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G232700 [exp] 1091 / 0 AT4G14180 1021 / 0.0 putative recombination initiation defect 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021481 pacid=23179148 polypeptide=Lus10021481 locus=Lus10021481.g ID=Lus10021481.BGIv1.0 annot-version=v1.0 ATGTACTACATGGAAACCGACGACGTCGATCTGCAATCGCCGGCGGAGGAATCATGCTCCCGCGGCCACAGATCGAGCCTTAGCATCGCCACAAGAGAAG GAGGAAGCATCTGTCTCGTCTGCATCTCCAATCTGATCACGAACCCTGCTGCCCTCTCCCACCAAGTCTCCTACGCCCTCACTCAGCTCACGGCGGCGCT GTCGCAGCCCCGATTCCTCGAAATCATGCTCACTTTCCACCCTCACTTCCTCGTCTCCCCTCTCCTCCATGCTCTCTCCCTCTTCCCTGACCCGTCCATC GCTTCTCTCCTCTTCCACCTTATCTCCACCCTATCCTCCTCTGCAGCCGCCATAGGTCCTCACTTCCTCGCCGGCCTCTCTGATCTCATCTCTTCCTCTT CCACAGGCTGGACTCCCGTCCACCTCCACATCCTGCACTGCTTTGGACTTCTTTTGAGCGGTCCTAATGTGGACGATCCCTATGCGCTGGTTAACGACAA AGTTGCTCTTCTCTCCAATATCGTTGCAGCTCTTCAAATCCCTAATGATGAAATCCAAGGGGAGGTTCTCTTCGTCCTCTATAGACTATCCCTCCACGCC AGCGACGAAGAATCTGCTGGCCTTATGTTAGCTTTCTCCTCAAAGTTCTGGCGATTTTCACTCGATGTCCTTCTGAAAACCCAGAATGACACTGTTCGCC TCAACTCTCTAGCACTTTTGACGGCTCTTGCCCAGAGAGGATACTTCGAAAATGAATACGGTTATGAGATCAACAGCATGGGCTCTGATGAAGCAGATAG CTTGATGCAAACGGCAGATGAAAGATTAGATGCCCCTCCTTTGACTGTCTTATTTTCCGAGGCTATCAAAGGTTCGCTGCTTTCATCGGATAGGCAGATT CAAGCCAGTTCGCTAGATCTCATCATGACCTATCTTACAAGGGACGGTGCACCAGGCAAAGAGGCACAAGTATTGCTAGAAGAGAACATTGTAGACTATG TCTTCGAAATACTGAGACTATCAGGCAAGTGCTCATCTACAGAACATACGAATCCTATCACCAACTCTTGCCTTCTAGTCCTTGATCTTCTCTCTGCAGC TGAAAAGGGCTTTATCGAAAGGCTTGTTGTTGGATTCTCAACTCTGGTCCCAGTGTTGTGCTATATCGCCGAAGTTCCTTTCCATCCAGTCCAGGAACAT GCCTTGAAGCTGATTCGCAGTGGCATATCCAATTTTCCTGGAATATTATCATCTTCCCACGTTGAGGAGATATATCTTGCTCTAACTAAGATGTTCAAGA GCCATGCTGATGGAGACTTAGGCATGCCATTGCAGACATTTGCAATTGTTTGTTCACTTTTTTCAACCCTTCTGGGATGCTCGACTCTTCAGACTAATCT GGTTATGACAGTTCAAGAAGCAATAAATTATGCCATTTTAGCTTGTCTAAATACATCCCAGAAAGATCCTAGACAGCTCTTGCACGCCTTTGACTTGGTT AAAAAGGCATACAGCCAGAATTACCAAGTGGGATCCACAGACATAAGGAACTGCATCATTAACATATGTACGACACACCTATTGCCCTGGATTGTTGCTG CCTCAGATGAAGTAGACGAGGAAATTTTGCTCGGGACACTAGAAACGTTTCACATTATACTGGTTCAGGATTCTGATAACCAAGCAAGAGGTTTCGCAGA AGCCATGGTCACCTCAGCTTGGTTCAGTTGGTCATTTGGAAGTCTGGGATTATTTCCTACTGAAAAGATGAAGATGGGAGTATATGTACTGTTCAGTTCT CTTGTAAATGTTCTTGGAACTAGCACTGGGCAATGCATTCTAGATGCTGCTGCAGATCTGCCAATCGATCCTATGGACCTGCTGTTTCTACTTGGGCAGA ACTCGGGAGATGCATCATTGTCGTGTTGCCAGTCTGCAGTTCTGTTGATTTTACATACCAGTTCTTTATATGATGACAGGGTTGCAGATGAGAAGTCGAT CCTAGCTTCAATTGAACAGTATGTTCTTGTGAATTATAGTGATCTTTTGGGCAGGAACTCTGACACATCAAAGATAATGCAACTGATAAGTCTTTATGGT TTATGTCGGGGTTTTGCCAATGGGCAGAACCAGAATTCGTACAGCCTCGAAGCTGAAAACACAGTGCTGCATCTAGTCTCCCAAAATGATGGGGATTTGC TCTCATCTAGAATTCACTATCTATCTTTGAAATGGTTATTTCAACAAGAGAAGATAAGCAAGCTACTGGCTTTTCAAATGCTGAAATTCAGCAGAAGCAA GGGTTTAGATGCAACCTGTATGCTTGGCCCTTTGGAGATTACTCAGACTGTGAGCTTGAAAACCATTGCAGAGTTGGCATCGTCAGGAGATAACCATGCT GCAAGAATTCTTGTATACTTGTTATTACAGCTTGTTGAAGAAGAGGGTCAGGAGGAGGACATTTTACTGGTATTACATCTCATGAAATCCGTTGTTGAGA CCGCACCAGCTTCAGCAAATGAATTATGTCTGACTGGCATAGGAAATTCTCTCAGAAAACTTCATTACAGCCAGCATCATTCTCCTTCACCACATATATT CACGGCTGCCCAAATTCTAATCTCCAATGTTCTTTGCTACGTGAAACCAGAAGCACTTTGTGATGATGATGATGCTTGGCTCGCAGTGACAGTAAAGATG ATAGACTGTTTAGTCACGCAAAGAAAAAACGTCAAAAGCTCGTCTGATGAAGGGCTGCAAGTTATTGCCAATTTCTGTTTGATTTTGCACCAGTCCACAA AGAAAGTCCTGTTAGGCGCTTCCAACGCCATACTCTTCAACGTTTCCCTGGTCTCTATGGTTGACGGCTTGATGCGTGCAGCCTGCTCAAAAGGACCCGA TTTGGTGGGTTACGACGAAACAACATCAGGTGGAGAAAACCTGTTAGTCCTGCTCTTGCTCTGCTATTTTTCCTTCAGAAGTATACAAACTCTTCTTCCA GAGTCCGTGGACTGGGAAACTCTACTAGAACCATCAATTGACAAAGGGTCACCTACCATGGGGATCAACTGCATCGACTTGTGTCGGCTGATGCATTTCG GGTCTCCTCTCATCAAGCTCGTTGCTTCATATTGCCTGCTCGAGATATTCACTAGGATATCACAACAAGGAAACAAGAAGTTCTGTCCAAAGGGCTGTCA TCTAACATCCATAACTGCTATACTACAAGGCCTACTGTTTTACAGCGACTCAAGGGTGTCAACCAACTGCGGCCTCTGCCTTTCCATGCTTTTGAACTGG CTGCAAAACCAAGAAGATTATGATGATAATAACTGGTGCAGGCTGATTGTAGAAGAGATGGCAACGTCATTGGCTGTCCCTTGCTTCGCATCAAAATCGT TCCTCAATCGCCATAAGCCTGCTGTTCATGTAACAGTTGCAATGCTGCAGAAGATCCACAATCCTCCTTCGTGGATCAGCAGTGTATTCGACAAAGCCTG CATTGATGGCATACTAAAGAACCTTAGTGCGAGTACTGTAACGAGAGAAATTCTAGAGCTGTTTCGGCAGCTGCTGAATTCGAAACTGTTGAAGAGTAAG GATCAAGTGTCTTGTTTGAACAGATTGCTCCAAGAGTGCAGGAAGCAGGCATATGAGGAGGAAGAAGAAGAAGAAGAAGGTTGTGGAGTTGAGTTGAAGA TTGATGGAGTGGATGAAGTTGGAGCAGTTTGTGAGTACCTTATTCAGTTGTTGATATCTTCATCTTCTTCTTCTTCTCCGGACATGAATCCTCGTACCCA GCGGAGAAGGCTGTTGGAGGAAATTGAATTGTTATCCACTATGACTAATGCTATGAATGGGAGATGA
AA sequence Show only first row Show all	>Lus10021481 pacid=23179148 polypeptide=Lus10021481 locus=Lus10021481.g ID=Lus10021481.BGIv1.0 annot-version=v1.0 MYYMETDDVDLQSPAEESCSRGHRSSLSIATREGGSICLVCISNLITNPAALSHQVSYALTQLTAALSQPRFLEIMLTFHPHFLVSPLLHALSLFPDPSI ASLLFHLISTLSSSAAAIGPHFLAGLSDLISSSSTGWTPVHLHILHCFGLLLSGPNVDDPYALVNDKVALLSNIVAALQIPNDEIQGEVLFVLYRLSLHA SDEESAGLMLAFSSKFWRFSLDVLLKTQNDTVRLNSLALLTALAQRGYFENEYGYEINSMGSDEADSLMQTADERLDAPPLTVLFSEAIKGSLLSSDRQI QASSLDLIMTYLTRDGAPGKEAQVLLEENIVDYVFEILRLSGKCSSTEHTNPITNSCLLVLDLLSAAEKGFIERLVVGFSTLVPVLCYIAEVPFHPVQEH ALKLIRSGISNFPGILSSSHVEEIYLALTKMFKSHADGDLGMPLQTFAIVCSLFSTLLGCSTLQTNLVMTVQEAINYAILACLNTSQKDPRQLLHAFDLV KKAYSQNYQVGSTDIRNCIINICTTHLLPWIVAASDEVDEEILLGTLETFHIILVQDSDNQARGFAEAMVTSAWFSWSFGSLGLFPTEKMKMGVYVLFSS LVNVLGTSTGQCILDAAADLPIDPMDLLFLLGQNSGDASLSCCQSAVLLILHTSSLYDDRVADEKSILASIEQYVLVNYSDLLGRNSDTSKIMQLISLYG LCRGFANGQNQNSYSLEAENTVLHLVSQNDGDLLSSRIHYLSLKWLFQQEKISKLLAFQMLKFSRSKGLDATCMLGPLEITQTVSLKTIAELASSGDNHA ARILVYLLLQLVEEEGQEEDILLVLHLMKSVVETAPASANELCLTGIGNSLRKLHYSQHHSPSPHIFTAAQILISNVLCYVKPEALCDDDDAWLAVTVKM IDCLVTQRKNVKSSSDEGLQVIANFCLILHQSTKKVLLGASNAILFNVSLVSMVDGLMRAACSKGPDLVGYDETTSGGENLLVLLLLCYFSFRSIQTLLP ESVDWETLLEPSIDKGSPTMGINCIDLCRLMHFGSPLIKLVASYCLLEIFTRISQQGNKKFCPKGCHLTSITAILQGLLFYSDSRVSTNCGLCLSMLLNW LQNQEDYDDNNWCRLIVEEMATSLAVPCFASKSFLNRHKPAVHVTVAMLQKIHNPPSWISSVFDKACIDGILKNLSASTVTREILELFRQLLNSKLLKSK DQVSCLNRLLQECRKQAYEEEEEEEEGCGVELKIDGVDEVGAVCEYLIQLLISSSSSSSPDMNPRTQRRRLLEEIELLSTMTNAMNGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14180		ATPRD1	putative recombination initiat...		Lus10021481 [exp]	0	1
AT3G09080			Transducin/WD40 repeat-like su...		Lus10017180 [exp]	12.9	0.8131
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10014047 [exp]	24.5	0.8032
AT1G04650			unknown protein		Lus10023676 [exp]	24.7	0.8002
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023907 [exp]	26.0	0.7531
AT4G01270			RING/U-box superfamily protein...		Lus10005127 [exp]	26.5	0.7994
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10015971 [exp]	36.7	0.7926
AT5G10530			Concanavalin A-like lectin pro...		Lus10007077 [exp]	40.4	0.7783
AT1G27460		NPGR1	no pollen germination related ...		Lus10018679 [exp]	42.1	0.7696
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10002459 [exp]	44.7	0.7902
AT1G71760			unknown protein		Lus10004010 [exp]	44.9	0.7757

Compare expression of checked genes

Lus10021481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.