Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60580 469 / 9e-163 RING/U-box superfamily protein (.1.2.3.4) AT3G09760 362 / 5e-121 RING/U-box superfamily protein (.1) AT5G03180 305 / 8e-99 RING/U-box superfamily protein (.1.2) AT3G06330 195 / 4e-59 RING/U-box superfamily protein (.1.2.3) AT5G18760 167 / 6e-47 RING/U-box superfamily protein (.1) AT2G37950 69 / 4e-13 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 62 / 5e-11 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G05830 59 / 6e-10 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G59000 56 / 1e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 56 / 2e-08 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022585 [exp] 865 / 0 AT5G60580 474 / 1e-164 RING/U-box superfamily protein (.1.2.3.4) Lus10037410 [exp] 598 / 0 AT5G60580 506 / 2e-176 RING/U-box superfamily protein (.1.2.3.4) Lus10041301 [exp] 585 / 0 AT2G28450 878 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10026501 [exp] 380 / 6e-127 AT3G09760 414 / 5e-140 RING/U-box superfamily protein (.1) Lus10019931 [exp] 344 / 3e-113 AT3G09760 360 / 2e-119 RING/U-box superfamily protein (.1) Lus10012791 [exp] 219 / 8e-66 AT3G06330 388 / 3e-132 RING/U-box superfamily protein (.1.2.3) Lus10033985 [exp] 219 / 6e-63 AT3G06330 384 / 7e-126 RING/U-box superfamily protein (.1.2.3) Lus10038632 [exp] 189 / 1e-54 AT3G06330 328 / 3e-109 RING/U-box superfamily protein (.1.2.3) Lus10012793 [exp] 142 / 4e-39 AT3G06330 192 / 8e-61 RING/U-box superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G013300 [exp] 530 / 0 AT5G60580 492 / 3e-171 RING/U-box superfamily protein (.1.2.3.4) Potri.006G129000 [exp] 416 / 2e-141 AT3G09760 381 / 7e-128 RING/U-box superfamily protein (.1) Potri.016G022900 [exp] 357 / 6e-119 AT5G60580 337 / 7e-111 RING/U-box superfamily protein (.1.2.3.4) Potri.006G024000 [exp] 347 / 8e-115 AT5G60580 361 / 4e-120 RING/U-box superfamily protein (.1.2.3.4) Potri.010G014800 [exp] 236 / 7e-73 AT3G06330 409 / 8e-141 RING/U-box superfamily protein (.1.2.3) Potri.010G014950 [exp] 236 / 1e-72 AT3G06330 409 / 5e-141 RING/U-box superfamily protein (.1.2.3) Potri.008G196400 [exp] 202 / 1e-59 AT3G06330 377 / 3e-128 RING/U-box superfamily protein (.1.2.3) Potri.010G195100 [exp] 65 / 8e-12 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G094000 [exp] 63 / 5e-11 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G105900 [exp] 63 / 5e-11 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10021482 pacid=23179202 polypeptide=Lus10021482 locus=Lus10021482.g ID=Lus10021482.BGIv1.0 annot-version=v1.0 ATGGAGAAGTTTTTGAATGAGAAGAAGAACGAAGTGGGTTCTAGCCAATCTGCTGCTTCTCCTAGTAGTCTTCTTGTCCACAAGGCTGAAGACACAACTG GAATAGTAGAAGTAGGCCACAATGGTCACAACTGGAAGAAGAAAAACCTGTTTCTAGAGATACCAACAAGAACTTTGGAAGGATCTCCACAAACAGATAG TGTTGTCGTTAAAATGCCACCAACAACACCTAGCCAAACACCAAGGAAGGTGAATTTCCTTCTCACGCCTACATCTGCTGACTGTAGAGGAGGAGGAGTC ATTGGATCCCCAACAGCTTCCACTCCATCCAGGGGGAGGTCTTCTTTGAAGAGTCTGGTGCCTAAAATAAGCTTCAAGTCTCGAATTTCCACGTTGAATA ATGGAAAGCCGGCCAATCTACCTCCGGAAACCGCTTCATTTACTGCAACGCCACAAGGACAGCCTTCCATCCCAAGATCATTGTCACTGACAAAGATTTT CACCCCTAGGATGAAAAGAACATCATCTCTGCCCCTTACACCGGATTCTATGCACAGTGAAAACATTAGTGGCACTCTCAATCCAACTAACGAAGGTCCA TTAAACAAGATTGGTCGCTCACGCTCAGTCCCTGAACTTGACAAGGAAGGAAGCATACGGGGAATGGATTCATTCTTCCGTGTGATTCCTTCGACTCCTA GACTTAAAGGAGATCATATATTATCACATCCTTCTTCCCCGGCTGTTTCTGCTGCTGACAATGATGATGGTGAAGATATACCTGAAGAAGAGGCTGTATG TAGGATTTGTCTGGTTGAACTTTGTGAAGGAGGGGAGACCCTTAAGATGGAATGCAGTTGCAAAGGTGAACTTGCTCTGGCCCATCAAGAATGTGCAGTG AAATGGTTTAGTATCAAAGGGAACAAGACTTGTGATGTGTGCAAGCAACAAGTTCAGAACTTGCCTGTTACTCTCTTACGGATACAGAGTATGGTCTGGC AAGAAGTCCCTATACTCGTCATTGTTAGCATGCTTGCCTACTTTTGCTTCCTGGAGCAGCTTCTGGTAGGGCGTATGGGAACTGGTGCAATTGCTATATC TCTTCCATTTTCATGTGTGCTGGGTCTCCTATCGTCCATGATCTCATCAACCATGGTGAAGAGAAGATTCGTTTGGATTTATGCATCAATCCAATTTGCA TTAGTTGTTCTTTTTGCTCACATTTTCTACTCATTGGTTGGTGTACAAGCAGTTCTGTCTGTGCTACTGTCCACGTTTGCTGGATTTGGTGTAGCCATGA GTGGAAGTTCAATCATCATCGAGTTCATAAGATGGAGAAGACGGTGGCGAACAGAACAACAGCCGGTAAATTCATCTGGAGTAGTCCCTCCTTCAGCTAC TGCTGCTGCAAGCCACCATACAATTGATGTATAA
AA sequence Show only first row Show all	>Lus10021482 pacid=23179202 polypeptide=Lus10021482 locus=Lus10021482.g ID=Lus10021482.BGIv1.0 annot-version=v1.0 MEKFLNEKKNEVGSSQSAASPSSLLVHKAEDTTGIVEVGHNGHNWKKKNLFLEIPTRTLEGSPQTDSVVVKMPPTTPSQTPRKVNFLLTPTSADCRGGGV IGSPTASTPSRGRSSLKSLVPKISFKSRISTLNNGKPANLPPETASFTATPQGQPSIPRSLSLTKIFTPRMKRTSSLPLTPDSMHSENISGTLNPTNEGP LNKIGRSRSVPELDKEGSIRGMDSFFRVIPSTPRLKGDHILSHPSSPAVSAADNDDGEDIPEEEAVCRICLVELCEGGETLKMECSCKGELALAHQECAV KWFSIKGNKTCDVCKQQVQNLPVTLLRIQSMVWQEVPILVIVSMLAYFCFLEQLLVGRMGTGAIAISLPFSCVLGLLSSMISSTMVKRRFVWIYASIQFA LVVLFAHIFYSLVGVQAVLSVLLSTFAGFGVAMSGSSIIIEFIRWRRRWRTEQQPVNSSGVVPPSATAAASHHTIDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60580			RING/U-box superfamily protein...		Lus10021482 [exp]	0	1
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Lus10021683 [exp]	2.0	0.8439
AT5G60580			RING/U-box superfamily protein...		Lus10022585 [exp]	3.2	0.8712
					Lus10009962 [exp]	4.7	0.8093
AT2G35510		SRO1	similar to RCD one 1 (.1)		Lus10035390 [exp]	6.2	0.8449
AT5G66900			Disease resistance protein (CC...		Lus10033299 [exp]	7.1	0.8435
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Lus10041386 [exp]	7.3	0.8451
					Lus10040816 [exp]	11.4	0.8197
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10032022 [exp]	13.0	0.8254
AT4G33620			Cysteine proteinases superfami...		Lus10020445 [exp]	13.2	0.8276
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10017796 [exp]	16.9	0.8043

Compare expression of checked genes

Lus10021482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.