Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05510 140 / 6e-42 Protein of unknown function (DUF1264) (.1) AT2G31985 135 / 5e-40 Protein of unknown function (DUF1264) (.1) AT4G18920 60 / 2e-11 Protein of unknown function (DUF1264) (.1) AT5G45690 56 / 9e-10 Protein of unknown function (DUF1264) (.1) AT1G29680 56 / 1e-09 Protein of unknown function (DUF1264) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022586 [exp] 224 / 4e-75 AT1G05510 331 / 6e-116 Protein of unknown function (DUF1264) (.1) Lus10005416 [exp] 50 / 2e-08 AT5G45690 109 / 5e-31 Protein of unknown function (DUF1264) (.1) Lus10005415 [exp] 50 / 5e-08 AT1G29680 233 / 1e-78 Protein of unknown function (DUF1264) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G148050 [exp] 84 / 6e-22 AT1G05510 0 / 1 Protein of unknown function (DUF1264) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06884 [flax] [poplar] DUF1264 Protein of unknown function (DUF1264)
Representative CDS sequence Show only first row Show all	>Lus10021483 pacid=23179177 polypeptide=Lus10021483 locus=Lus10021483.g ID=Lus10021483.BGIv1.0 annot-version=v1.0 ATGTCGTCGTCCCAACATCCAGAAGTTCCAGGGGATCCGACAGGCACCACCACTTCCCTGCTGGAGAAAGCCACCGCCACCATCAAGCGATTCGGCCCCA TCAGCCACATCCACCAACACCTCTGCGCGTTTCATTTCTACAGCCATGACATGACGAGGCAAGTGGAGGGACCCGTGGAACGCCAAGACCTGGAGAAGGT GGCCAAGACATACGGCAAGACTATCCACTTCTGGCAGGTTGACCGGGGGGACAACCTCCCACTCGGTATCCCCAACATCATGTTCGCCCTCACCCGCGAG GGTCAGCTCTATGACGAGCTTGCTCAAGATGTGGAGAAGAGGTACAAGGTGTCGTTTGCGGAACAGAGGGAGAGTAGGAAGGACATGGAAGGACCAGCGA TGGGGCGGCATCCTCTTGCAAACGGTGCTAGCAGGGGGCTCCAGACTGTGCTTAATGAGGTTGATGTCGAGCCTCCTTCTGGGAGTACTCCCCGAGTCTT TGTTTAA
AA sequence Show only first row Show all	>Lus10021483 pacid=23179177 polypeptide=Lus10021483 locus=Lus10021483.g ID=Lus10021483.BGIv1.0 annot-version=v1.0 MSSSQHPEVPGDPTGTTTSLLEKATATIKRFGPISHIHQHLCAFHFYSHDMTRQVEGPVERQDLEKVAKTYGKTIHFWQVDRGDNLPLGIPNIMFALTRE GQLYDELAQDVEKRYKVSFAEQRESRKDMEGPAMGRHPLANGASRGLQTVLNEVDVEPPSGSTPRVFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05510			Protein of unknown function (D...		Lus10021483 [exp]	0	1
AT2G25760			Protein kinase family protein ...		Lus10038275 [exp]	1.7	0.8617
					Lus10037041 [exp]	1.7	0.8877
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Lus10018270 [exp]	4.5	0.8074
AT2G42760			unknown protein		Lus10015227 [exp]	5.3	0.8294
AT2G47880			Glutaredoxin family protein (....		Lus10005937 [exp]	5.7	0.8027
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10026948 [exp]	10.8	0.8003
					Lus10032770 [exp]	22.1	0.8693
AT5G05490		SYN1 BP5, SYN1 ...	SYNAPTIC 1, DETERMINATE, INFER...		Lus10022711 [exp]	22.6	0.7599
					Lus10035963 [exp]	26.8	0.7642
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022927 [exp]	30.5	0.7240

Compare expression of checked genes

Lus10021483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.