Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23700 196 / 1e-59 Nucleic acid-binding proteins superfamily (.1) AT5G30510 72 / 7e-14 ARRPS1, RPS1 ribosomal protein S1 (.1) AT1G71720 64 / 5e-11 PDE338 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) AT4G29060 45 / 4e-05 EMB2726 embryo defective 2726, elongation factor Ts family protein (.1.2) AT1G12800 44 / 9e-05 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022587 [exp] 558 / 0 AT3G23700 374 / 3e-128 Nucleic acid-binding proteins superfamily (.1) Lus10028726 [exp] 68 / 3e-12 AT1G71720 506 / 8e-177 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Lus10028698 [exp] 66 / 1e-11 AT1G71720 516 / 0.0 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Lus10017100 [exp] 59 / 2e-09 AT5G30510 590 / 0.0 ribosomal protein S1 (.1) Lus10037822 [exp] 56 / 2e-08 AT5G30510 583 / 0.0 ribosomal protein S1 (.1) Lus10011108 [exp] 44 / 0.0002 AT4G29060 1031 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Lus10043229 [exp] 42 / 0.0006 AT4G29060 1035 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G148500 [exp] 263 / 1e-85 AT3G23700 439 / 2e-153 Nucleic acid-binding proteins superfamily (.1) Potri.005G197900 [exp] 63 / 9e-11 AT1G71720 501 / 2e-174 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Potri.002G063400 [exp] 61 / 3e-10 AT1G71720 514 / 2e-179 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Potri.008G101100 [exp] 54 / 4e-08 AT5G30510 615 / 0.0 ribosomal protein S1 (.1) Potri.010G150300 [exp] 53 / 1e-07 AT5G30510 575 / 0.0 ribosomal protein S1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00575 [flax] [poplar] S1 S1 RNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10021484 pacid=23179252 polypeptide=Lus10021484 locus=Lus10021484.g ID=Lus10021484.BGIv1.0 annot-version=v1.0 ATGCCGGGAGGAACTTTCACCCTCTCCCACGGAGAATCACAAGCTACCTTCCAGCAGCTCCATTTCCTCTCTCCCCGTTCACCATTAATCAAGCTGCCAA CGTTTACTCATCTGAGAAATACCCACAAACTAAGGCACTCTTCTTCAGGTCTCGTTGTCAGGGCTGGAGGAGATTCCAATGGGTCACCCTCCGCCGCCAC CACCACCGCCACCACCACCGCCAGCAGAGTTGTTCCTGATGTCGACAGGAAAGCTCGGAGACAAGCTGACTGGAACAAGGCAAGAAAACTTAAGGCCGGT GGGTCGGTCCATGTTGTCAAGGTTGTGGGTTGGAATAGCGGGGGTTTAATTGTGCGTTTCCATTCTCTTCTGGGTTTCCTTCCCTTTACACAGCTCAGTC CTGGTAACCTTTTTAAAGAGCCGCGCAAAAGTTATAATATTCGAACCGTGGCAGCAAGTATGATCAATTCAGTCATTTCCGTGAAGGTAGTGGCGGCAAA CGAGGAAACCAGGATCTTAATTTTCTCGGAAAAGGAAGTTGCTTGGGATAAGTACTCCAAAGGTGTCAAAGTGGGGGATGTCTTCGAAGGACGAGTAGGA TTGGTCGACGATTATGATGCCTTTGTTCACTTGCGTTTCCCTGATGGGCTGTATCACCTCACTGGACTAGTACGTCTTTCGGAGGTTTCATGGGATTTTG TTCGAGATGCAAGAGATGTCTTGACTAGCGGTGAAGAAGTGAAGGTCAAAGTATGTAAGATTGATAGTAGTATAGAGGACGTAAGAATTACTCGAGAAGG ATTCGAGAAGCGTGTAGTCTCGCAAGATCTCCAACTCTGGCTATCGAATGCTCTACCTAAAGATAGAAAGTTTGTCCTCTTGGCCCGTGCTGGTAGGCAG GTACAGGAAATATTGACGACAATGCTTGATCAGCAGGGCATCAAGAAGGTGTTGCAGCATGTTCTAGAACGTGTTCCATGA
AA sequence Show only first row Show all	>Lus10021484 pacid=23179252 polypeptide=Lus10021484 locus=Lus10021484.g ID=Lus10021484.BGIv1.0 annot-version=v1.0 MPGGTFTLSHGESQATFQQLHFLSPRSPLIKLPTFTHLRNTHKLRHSSSGLVVRAGGDSNGSPSAATTTATTTASRVVPDVDRKARRQADWNKARKLKAG GSVHVVKVVGWNSGGLIVRFHSLLGFLPFTQLSPGNLFKEPRKSYNIRTVAASMINSVISVKVVAANEETRILIFSEKEVAWDKYSKGVKVGDVFEGRVG LVDDYDAFVHLRFPDGLYHLTGLVRLSEVSWDFVRDARDVLTSGEEVKVKVCKIDSSIEDVRITREGFEKRVVSQDLQLWLSNALPKDRKFVLLARAGRQ VQEILTTMLDQQGIKKVLQHVLERVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23700			Nucleic acid-binding proteins ...		Lus10021484 [exp]	0	1
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10013086 [exp]	1.0	0.8769
AT5G55530			Calcium-dependent lipid-bindin...		Lus10043169 [exp]	2.0	0.8676
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10006068 [exp]	3.5	0.8751
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Lus10038354 [exp]	5.5	0.8700
AT5G46390			Peptidase S41 family protein (...		Lus10004601 [exp]	5.7	0.8452
AT2G40770			zinc ion binding;DNA binding;h...		Lus10030512 [exp]	6.9	0.7955
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10040777 [exp]	7.1	0.8659
AT3G18500			DNAse I-like superfamily prote...		Lus10036357 [exp]	8.1	0.8408
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10035028 [exp]	8.5	0.8494
AT5G61040			unknown protein		Lus10021155 [exp]	8.8	0.8553

Compare expression of checked genes

Lus10021484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.