Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05840 718 / 0 Eukaryotic aspartyl protease family protein (.1) AT3G02740 491 / 6e-171 Eukaryotic aspartyl protease family protein (.1) AT5G36260 429 / 6e-147 Eukaryotic aspartyl protease family protein (.1) AT1G65240 417 / 4e-142 Eukaryotic aspartyl protease family protein (.1) AT5G22850 316 / 2e-102 Eukaryotic aspartyl protease family protein (.1) AT2G36670 312 / 8e-101 Eukaryotic aspartyl protease family protein (.1.2) AT1G08210 291 / 4e-93 Eukaryotic aspartyl protease family protein (.1) AT5G43100 152 / 8e-40 Eukaryotic aspartyl protease family protein (.1) AT4G33490 133 / 4e-34 Eukaryotic aspartyl protease family protein (.1.2) AT3G50050 134 / 2e-33 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041103 [exp] 541 / 0 AT3G02740 548 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10036430 [exp] 536 / 0 AT3G02740 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027001 [exp] 521 / 0 AT5G36260 546 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10020201 [exp] 520 / 0 AT5G36260 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10005356 [exp] 295 / 4e-94 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021397 [exp] 295 / 5e-94 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10014391 [exp] 290 / 2e-92 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10027732 [exp] 280 / 2e-88 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035556 [exp] 279 / 7e-83 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G146400 [exp] 786 / 0 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G054900 [exp] 567 / 0 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 303 / 2e-97 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 301 / 1e-96 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 291 / 8e-93 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.016G096700 [exp] 276 / 4e-87 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.014G020200 [exp] 142 / 4e-36 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G144600 [exp] 140 / 1e-35 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G108700 [exp] 136 / 2e-34 AT2G17760 515 / 1e-179 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 130 / 6e-33 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10021485 pacid=23179162 polypeptide=Lus10021485 locus=Lus10021485.g ID=Lus10021485.BGIv1.0 annot-version=v1.0 ATGGTCGTTGTGGTGGCCACCGCCGCCGCATCTACTGCTGTGTGGAGGAGTTGTTTCCTTTTGATCTTCTCACCCCTTTGGATTGTCTTCTTAGCTGTAG CTGCCACTGCCTCTGGCGGGGTCTCTGGTCCAGGCAACGGAGTTTTCAGCGTCAAGTACCGTTACGCGGGTATGCAACGCACTCTCAGTGACCTTAAGGC TCACGATGATCGCCGCCAAATTCAAATTCTTGCCGGCGTCGATCTTCCTCTTGGTGGTACAGGCCGTCCCAACGACGTCGGGCTTTATTATGCTAAGATC GGAATTGGGACTCCTTCCAACGACTATTATGTGCAAGTAGATACAGGAAGTGATATTATGTGGGTCAACTGTATTCAGTGCAAAGAGTGTCCCAGAACAA GCTCACTTGGTATAGATCTCACTCTGTATGATATAAATCAGTCGGCTTCTGGGACTTTGGTTACTTGTGATCAAGATTTTTGCTCTGAGGTTAATGGTGG CCCATTGTCAGGATGCACTGCAAATGTGACCTGTCCATACCTAGAGATATATGGGGATGGGAGCTCCACTGCAGGCTATTTTGTTAACGATGTTGTGCAG TACGACAGAGTGTCTGGAGACCTTGAAACTACCTCCGCAAATGGAAGCGTGATATTTGGATGTGGTGCTAGGCAATCAGGAGATCTGGGCTCATCTACTG AAGAAGCACTCGATGGGATACTTGGATTTGGAAAAGCCAATTCATCAATGATTTCTCAGCTGGCTGCTACAGGAAGAGTGAAAAAGATATTTGCTCACTG CTTAGATGGCAAAAACGGGGGTGGTATCTTTGCTATTGGGCATGTTGTGGAGCCAAGAGTTAATATGACACCGATTATGCTAGACCAGCCCCATTACAAC ATCAATATGACGGCAGTTCAAGTTGGCCATGATGTCCTAAATCTTCCAGCAGATGTATTTGAAGCAGGCGATAGGAAAGGGGCTATAATTGATAGTGGTA CAACATTGGCTTATCTCCCAGAGATGATTTATAAGCCTTTAGTAACTAAGATAATCGCTGAGCAACCTGATCTGAGGGTCCAGACTGTCCGTGATGAATA TACATGTTTTCAGTATTCTGGAAGCGTGGATGATGCATTTCCAAACGTGACTTTCTATTTTGACAATTCACTCTTTCTAAGGGTGTACCCACACGAGTAC CTATTCCCTTTTGATGGTTACTGGTGTCTTGGATGGCAAAACAGTGGACTGCAATCAAGGGACAGAAGGAACATGACTCTTTTAGGAGATTTGGTACTCT CGAATAAACTAGTGTTATATGACCTTGAACGGCAAGCCATCGGTTGGACCGAATATAACTGTTCGTCTAGCATTACCGTGCAAGATGAAAAGACTGGAAC AGTACATTTAGTGGGCTCCCACTATATTCCATCATCTGCTTGCGGTTTCAGCACAGAATGGGCGATGCTCCTCTTGTTGTTAAGTACACTGTTGTTATAT TAG
AA sequence Show only first row Show all	>Lus10021485 pacid=23179162 polypeptide=Lus10021485 locus=Lus10021485.g ID=Lus10021485.BGIv1.0 annot-version=v1.0 MVVVVATAAASTAVWRSCFLLIFSPLWIVFLAVAATASGGVSGPGNGVFSVKYRYAGMQRTLSDLKAHDDRRQIQILAGVDLPLGGTGRPNDVGLYYAKI GIGTPSNDYYVQVDTGSDIMWVNCIQCKECPRTSSLGIDLTLYDINQSASGTLVTCDQDFCSEVNGGPLSGCTANVTCPYLEIYGDGSSTAGYFVNDVVQ YDRVSGDLETTSANGSVIFGCGARQSGDLGSSTEEALDGILGFGKANSSMISQLAATGRVKKIFAHCLDGKNGGGIFAIGHVVEPRVNMTPIMLDQPHYN INMTAVQVGHDVLNLPADVFEAGDRKGAIIDSGTTLAYLPEMIYKPLVTKIIAEQPDLRVQTVRDEYTCFQYSGSVDDAFPNVTFYFDNSLFLRVYPHEY LFPFDGYWCLGWQNSGLQSRDRRNMTLLGDLVLSNKLVLYDLERQAIGWTEYNCSSSITVQDEKTGTVHLVGSHYIPSSACGFSTEWAMLLLLLSTLLLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05840			Eukaryotic aspartyl protease f...		Lus10021485 [exp]	0	1
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10036618 [exp]	1.4	0.9480
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10012050 [exp]	2.2	0.9459
AT2G17520		ATIRE1-2, IRE1A	ARABIDOPSIS THALIANA INOSITOL ...		Lus10035979 [exp]	3.3	0.9413
AT1G48790		AMSH1	associated molecule with the S...		Lus10009006 [exp]	5.3	0.9463
AT2G37150			RING/U-box superfamily protein...		Lus10023507 [exp]	5.4	0.9540
AT4G30790			unknown protein		Lus10005509 [exp]	6.0	0.9413
AT5G66930			unknown protein		Lus10019643 [exp]	6.2	0.9480
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10033881 [exp]	7.1	0.9380
AT3G43230			RING/FYVE/PHD-type zinc finger...		Lus10039922 [exp]	9.0	0.9319
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10002740 [exp]	9.2	0.9269

Compare expression of checked genes

Lus10021485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.