Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36250 388 / 3e-132 Protein phosphatase 2C family protein (.1) AT3G02750 386 / 1e-130 Protein phosphatase 2C family protein (.1.2.3) AT1G16220 364 / 2e-122 Protein phosphatase 2C family protein (.1) AT1G79630 358 / 6e-120 Protein phosphatase 2C family protein (.1.2.3) AT1G03590 333 / 1e-110 Protein phosphatase 2C family protein (.1) AT4G03415 330 / 2e-109 Protein phosphatase 2C family protein (.1.2) AT5G01700 294 / 2e-96 Protein phosphatase 2C family protein (.1.2) AT5G27930 286 / 1e-93 Protein phosphatase 2C family protein (.1.2) AT3G05640 285 / 5e-93 Protein phosphatase 2C family protein (.1.2) AT3G16800 258 / 1e-82 Protein phosphatase 2C family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022588 [exp] 728 / 0 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10041277 [exp] 529 / 5e-178 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10037431 [exp] 526 / 9e-176 AT5G21160 643 / 0.0 LA RNA-binding protein (.1.2.3) Lus10000402 [exp] 375 / 3e-126 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10027122 [exp] 370 / 2e-124 AT1G16220 567 / 0.0 Protein phosphatase 2C family protein (.1) Lus10039802 [exp] 342 / 7e-114 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10018570 [exp] 342 / 8e-114 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10033708 [exp] 330 / 2e-109 AT1G03590 593 / 0.0 Protein phosphatase 2C family protein (.1) Lus10031631 [exp] 328 / 2e-108 AT1G03590 600 / 0.0 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G054200 [exp] 429 / 8e-148 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.013G085500 [exp] 409 / 6e-140 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.004G066200 [exp] 392 / 2e-133 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.001G473300 [exp] 387 / 3e-131 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.019G103100 [exp] 343 / 3e-114 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G144100 [exp] 340 / 3e-113 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G127900 [exp] 304 / 4e-99 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2) Potri.005G021900 [exp] 294 / 1e-96 AT5G27930 571 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.006G105000 [exp] 297 / 2e-96 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2) Potri.010G006200 [exp] 293 / 6e-96 AT3G05640 460 / 9e-163 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10021486 pacid=23179221 polypeptide=Lus10021486 locus=Lus10021486.g ID=Lus10021486.BGIv1.0 annot-version=v1.0 ATGCAGGTGGAAAAAGGGGTCGTAGGGGATCCTGCCTGTTCCATGGGATTGGATTGTTTCCTCAGCATAGCCAGGGCCCTTGGTACGTCTTGTTTTACCG ATGAAGGTACTCGTAGTAACGGCGGCGGCCCCGGTGGGCCCCGGCAATCGGCTTCCACCAACGCGGAAGCCATTAAGCGGCGTAAGAAAAGGCAGATGAT GATGAAGCGGAGTGATTCGAAGCTGGAGTTGTGGTTGCATAGGATCCCTGGGAGATTATTCTTGAATAGCTCTACGGATCTCGTGTCTCTGTTTACTAAG CCTGGGAAGAAAGGGGTCAATCAGGATGCCATGATTTTCTGGGAGAATTTTGGTCCATCTGAAGACACAATATTTTGTGGGATTTTTGATGGGCATGGAC CCAGTGGCCATCTTGTTGCGAAGAAAGTGAGGGACTCTCTGCCGTTAAAATTGAGAGCACAGTGGGAACTAGATTGTACGAGCAGTGAGCTTGGAAGAGC AGCAGCATCAACAGAATGTTCGCTCAATTCAGTTGAGTTTGAATCATTAGTGAACATAGATAATGGGAAAAGGGAAATGCAGACTGACAACGTGTTGGCG TTTAAAGACTCATTTTTTAAGGCCTTCAAGGCTATGGACAAAGAACTGCAGTTGCATCCTTATATTGATTGCTTCTGCAGTGGGACAACAGCGGTAACGG TGATCAAGCAGGGGCAGGATCTTATAATTGGGAATGTTGGTGATTCAAGAGCTGTGCTGGCTACTAGACATACCGACAACACCCTCATTGCAGTTCAGTT AACTGAAGATCTCAAACCGTCACTTCCTAATCAGTTGCTATATTGTTTCAACCTGCGAAACTACATATATTGCTCTGGTATAGCATTCATAAGAGAAGCA GAGAGGATTAAGATGTGCAAGGGGCGAGTTTTTGCCCTTCCAAATGAACCTGATGTTGCGAGGATTTGGCTGCCAAACAACAACTCCCCTGGACTCGCCA TGGCCCGTGCTTTTGGTGATTTCTGCCTCAAAGACTTTGGCTTGATCTCAGTCCCTGAGATTTCACACCATTGTATCACAGATAAGGATGAGTTTGTGGT GTTGGCTACTGATGGAGTATGGGATGTTATGTCGAATTCTGAGGTAGTGAGCATAGTGGGATCGGTACATCCTTCAAATGCAGCTCAAACCCTGGTTGAA TCAGCGCATCGAGCTTGGAGGACCAAATATCCTACATCAAAGACAGATGATTGTGCTGCCGTCTGCCTCTTCTTCAACTCCTCTTGA
AA sequence Show only first row Show all	>Lus10021486 pacid=23179221 polypeptide=Lus10021486 locus=Lus10021486.g ID=Lus10021486.BGIv1.0 annot-version=v1.0 MQVEKGVVGDPACSMGLDCFLSIARALGTSCFTDEGTRSNGGGPGGPRQSASTNAEAIKRRKKRQMMMKRSDSKLELWLHRIPGRLFLNSSTDLVSLFTK PGKKGVNQDAMIFWENFGPSEDTIFCGIFDGHGPSGHLVAKKVRDSLPLKLRAQWELDCTSSELGRAAASTECSLNSVEFESLVNIDNGKREMQTDNVLA FKDSFFKAFKAMDKELQLHPYIDCFCSGTTAVTVIKQGQDLIIGNVGDSRAVLATRHTDNTLIAVQLTEDLKPSLPNQLLYCFNLRNYIYCSGIAFIREA ERIKMCKGRVFALPNEPDVARIWLPNNNSPGLAMARAFGDFCLKDFGLISVPEISHHCITDKDEFVVLATDGVWDVMSNSEVVSIVGSVHPSNAAQTLVE SAHRAWRTKYPTSKTDDCAAVCLFFNSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02750			Protein phosphatase 2C family ...		Lus10021486 [exp]	0	1
AT5G14120			Major facilitator superfamily ...		Lus10025123 [exp]	3.0	0.9350
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Lus10013401 [exp]	6.8	0.9209
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10039821 [exp]	6.9	0.8826
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10012333 [exp]	7.9	0.8987
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10018541 [exp]	11.8	0.9104
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10006379 [exp]	11.8	0.8887
AT3G14830			unknown protein		Lus10041938 [exp]	12.1	0.9128
AT5G47040		LON2	lon protease 2 (.1)		Lus10001083 [exp]	13.0	0.8950
AT2G15580			RING/U-box superfamily protein...		Lus10001685 [exp]	13.8	0.8441
AT2G01690			ARM repeat superfamily protein...		Lus10021813 [exp]	16.5	0.8736

Compare expression of checked genes

Lus10021486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.