Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43810 243 / 3e-84 CAM7 calmodulin 7 (.1) AT5G21274 243 / 8e-84 ACAM-6, CAM6 calmodulin 6 (.1) AT3G56800 242 / 1e-83 ACAM-3, CAM3 calmodulin 3 (.1) AT2G27030 242 / 1e-83 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT2G41110 242 / 1e-83 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT1G66410 239 / 1e-82 ACAM-4, CAM4 calmodulin 4 (.1.2) AT5G37780 239 / 1e-82 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT3G22930 189 / 2e-62 CML11 calmodulin-like 11 (.1) AT4G14640 186 / 2e-61 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT2G41090 145 / 8e-45 Calcium-binding EF-hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041288 [exp] 243 / 4e-84 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 243 / 4e-84 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 243 / 4e-84 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10027283 [exp] 243 / 4e-84 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10022589 [exp] 207 / 2e-69 AT3G43810 255 / 2e-88 calmodulin 7 (.1) Lus10039391 [exp] 196 / 1e-65 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10001775 [exp] 149 / 8e-47 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3) Lus10009176 [exp] 147 / 7e-46 AT2G27030 186 / 3e-61 calmodulin 5 (.1.2.3) Lus10012109 [exp] 135 / 2e-40 AT2G27030 152 / 2e-46 calmodulin 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G024700 [exp] 243 / 3e-84 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 243 / 3e-84 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.006G026700 [exp] 243 / 3e-84 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.001G222200 [exp] 243 / 1e-83 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.015G032600 [exp] 231 / 3e-79 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.012G041000 [exp] 229 / 9e-79 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.008G159300 [exp] 192 / 6e-64 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.010G080900 [exp] 191 / 2e-63 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.005G052800 [exp] 167 / 5e-54 AT4G14640 228 / 7e-78 calmodulin-like 8, calmodulin 8 (.1) Potri.005G215700 [exp] 156 / 8e-50 AT3G22930 200 / 8e-67 calmodulin-like 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10021487 pacid=23179150 polypeptide=Lus10021487 locus=Lus10021487.g ID=Lus10021487.BGIv1.0 annot-version=v1.0 ATGGCCGATCAGCTCACCGACGATCAGATCTCTGAGTTCAAGGAGGCCTTTAGCCTATTCGACAAAGATGGCGATGGTCATCTCTCAGATCCCTCTTCCC CTCTCCCCCCTTCCCTTGTTTGTTTGTTTAGCTGTTGCATCACCACTAAGGAGCTTGGGACTGTGATGCGTTCACTGGGACAGAACCCAACCGAAGCAGA ACTTCAAGACATGATAAATGAGGTTGATGCTGACGGGAATGGGACGATAGATTTCCCGGAGTTCCTGAACCTGATGGCCCGTAAAATGAAGGACACAGAC TCAGAAGAGGAGCTGAAAGAGGCATTCCGAGTGTTCGACAAGGATCAGAATGGTTTCATATCAGCTGCAGAGCTGCGACATGTGATGACAAATCTCGGGG AGAAGCTGACAGACGAGGAGGTGGATGAGATGATCCGGGAGGCTTAA
AA sequence Show only first row Show all	>Lus10021487 pacid=23179150 polypeptide=Lus10021487 locus=Lus10021487.g ID=Lus10021487.BGIv1.0 annot-version=v1.0 MADQLTDDQISEFKEAFSLFDKDGDGHLSDPSSPLPPSLVCLFSCCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41110		ACAM-2, ATCAL5,...	calmodulin 2 (.1.2)		Lus10021487 [exp]	0	1
AT5G22580			Stress responsive A/B Barrel D...		Lus10020555 [exp]	1.4	0.9568
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10027716 [exp]	2.0	0.9483
AT2G39440			unknown protein		Lus10018300 [exp]	2.2	0.9580
AT2G15680		AtCML30	calmodulin-like 30, Calcium-bi...		Lus10014050 [exp]	2.4	0.9546
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Lus10006763 [exp]	3.2	0.9343
AT5G39020			Malectin/receptor-like protein...		Lus10025545 [exp]	3.9	0.9467
AT1G56260		MDO1	MERISTEM DISORGANIZATION 1, un...		Lus10020669 [exp]	4.7	0.9338
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10028349 [exp]	6.3	0.9382
					Lus10025141 [exp]	6.5	0.9389
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10026779 [exp]	8.2	0.9240

Compare expression of checked genes

Lus10021487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.