Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26980 589 / 0 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT5G21326 566 / 0 Ca2+regulated serine-threonine protein kinase family protein (.1) AT1G30270 507 / 8e-180 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT1G01140 495 / 2e-175 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT5G35410 410 / 3e-142 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT4G24400 395 / 4e-136 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT5G10930 360 / 3e-122 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT4G30960 357 / 2e-121 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G58380 355 / 5e-120 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT5G25110 350 / 5e-118 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022590 [exp] 709 / 0 AT2G26980 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10042816 [exp] 496 / 1e-175 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10028115 [exp] 496 / 1e-175 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10002692 [exp] 488 / 2e-172 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10030210 [exp] 484 / 3e-171 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10019411 [exp] 431 / 5e-150 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10043264 [exp] 421 / 2e-144 AT5G35410 630 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10032822 [exp] 385 / 4e-132 AT4G24400 738 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Lus10021852 [exp] 363 / 1e-123 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G222600 [exp] 642 / 0 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.009G021000 [exp] 630 / 0 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.006G062800 [exp] 508 / 4e-180 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.014G104200 [exp] 506 / 9e-180 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.002G177900 [exp] 501 / 5e-178 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.018G119200 [exp] 499 / 2e-176 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.018G130500 [exp] 419 / 1e-145 AT5G35410 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.006G068400 [exp] 410 / 3e-142 AT5G35410 686 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.002G109000 [exp] 409 / 8e-142 AT4G24400 652 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Potri.016G133500 [exp] 369 / 9e-126 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10021488 pacid=23179254 polypeptide=Lus10021488 locus=Lus10021488.g ID=Lus10021488.BGIv1.0 annot-version=v1.0 ATGTGCATATCTGTTCTTGCTTTGTCTCCATTTCATAAAATTAAGCGGGAGATAGCCACGATGAAGCTTATACAGCACCCTAATGTGGTCACTTTATACG AGGTAATGGGAAGCAAGACTAAGATATTCATTGTCATGGAGTTCGTTACTGGAGGAGAGCTTTTTGATAAAATTGTAAATCACGGACGAATGAGGGAAGA TGAAGCTAGGAGGTACTTTCAGCAGCTTATTAATGCGGTTGATTATTGTCATAGCAGGGGTGTCTTCCACAGAGATCTTAAGCCAGAAAACCTCCTGTTG GATGCATACGGAAACCTCAAGGTTTCGGATTTTGGTTTAAGTGCACTTTCACAGCAAGTCCGGGATGATGGCTTGCTTCATACAACTTGTGGGACACCAA ACTATGTAGCTCCTGAGGTTCTCAATGATGAAGGATATGATGGAGCCACGGCAGATCTGTGGTCGTGTGGCGTGATACTCTTCGTGCTGCTAGCAGGGTA CTTGCCTTTTGACGACTCTAATCTTATGAACCTGTATAAAAAACGCATAACGATTCCTGAAATCTTGGAGGATGAATGGTTTAGAAAGGATTACAAGCGT CCTGTTTTTGAGGAGAAAGAGAGACCCAACTTAGATGATGTTGAAGCTGTATTTAAGGACTCTGAAGAATATCATGTGACAGAGAAGAAAGAAGAACAAC CGACTATTATGAATGCATTCGACTTGATTTCCATGTCCAAAGGATTGAATCTTGAGAATTTGCTTGATGCTGAACAGCCGGTATTTAAAAGGGAAACAAG GTTCACGTCCAGGAGCTCAGCCAATGAGATCATCCACAAGATTGAAGAAGCTGCAAAACCTCTTGGTTTTGATGTTCATAAGAAAAATTACAAGATGAGG CTTGAGAACATGATAGCTGGTAGGAAAGGAAATCTCAATGTGGCGACCGAGATATTTCAAGTAGCACCATCTCTTCATATGGTGGAAGTCCGGAAAGCGA AAGGAGACACCTTGGAGTTCCATAAGTTCTACAAGAATCTCTCAACATGTCTTGAGGATGTGGTATGGACGACTGAAGAGGACTAG
AA sequence Show only first row Show all	>Lus10021488 pacid=23179254 polypeptide=Lus10021488 locus=Lus10021488.g ID=Lus10021488.BGIv1.0 annot-version=v1.0 MCISVLALSPFHKIKREIATMKLIQHPNVVTLYEVMGSKTKIFIVMEFVTGGELFDKIVNHGRMREDEARRYFQQLINAVDYCHSRGVFHRDLKPENLLL DAYGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDEGYDGATADLWSCGVILFVLLAGYLPFDDSNLMNLYKKRITIPEILEDEWFRKDYKR PVFEEKERPNLDDVEAVFKDSEEYHVTEKKEEQPTIMNAFDLISMSKGLNLENLLDAEQPVFKRETRFTSRSSANEIIHKIEEAAKPLGFDVHKKNYKMR LENMIAGRKGNLNVATEIFQVAPSLHMVEVRKAKGDTLEFHKFYKNLSTCLEDVVWTTEED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26980		CIPK3, SnRK3.17	SNF1-RELATED PROTEIN KINASE 3....		Lus10021488 [exp]	0	1
AT1G09160			Protein phosphatase 2C family ...		Lus10020666 [exp]	1.4	0.7735
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Lus10040910 [exp]	12.2	0.6885
AT3G54880			unknown protein		Lus10038690 [exp]	15.5	0.6054
AT2G40230			HXXXD-type acyl-transferase fa...		Lus10007509 [exp]	19.1	0.6742
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10029038 [exp]	24.3	0.6560
AT1G02100		SBI1	SUPPRESSOR OF BRI1, Leucine ca...		Lus10042909 [exp]	25.7	0.5321
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10040149 [exp]	26.5	0.6233
AT1G22790			unknown protein		Lus10028733 [exp]	32.0	0.6054
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10034227 [exp]	36.8	0.6356
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10029778 [exp]	44.0	0.6294

Compare expression of checked genes

Lus10021488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.