Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02800 446 / 8e-156 Kin2, APK2B protein kinase 2B (.1.2) AT1G14370 438 / 6e-153 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT1G69790 436 / 1e-152 Protein kinase superfamily protein (.1) AT5G02290 425 / 4e-148 NAK Protein kinase superfamily protein (.1.2) AT1G26970 421 / 3e-146 Protein kinase superfamily protein (.1) AT3G55450 405 / 1e-140 PBL1 PBS1-like 1 (.1.2) AT2G39660 405 / 3e-140 BIK1 botrytis-induced kinase1 (.1) AT1G07570 403 / 3e-139 APK1A Protein kinase superfamily protein (.1.2.3) AT2G28930 395 / 3e-136 APK1B protein kinase 1B (.1.2.3) AT5G15080 395 / 7e-135 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022591 [exp] 738 / 0 AT2G02800 462 / 2e-162 protein kinase 2B (.1.2) Lus10012850 [exp] 441 / 4e-154 AT2G02800 614 / 0.0 protein kinase 2B (.1.2) Lus10023794 [exp] 421 / 3e-147 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 421 / 2e-146 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 419 / 1e-145 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030496 [exp] 418 / 1e-145 AT2G02800 551 / 0.0 protein kinase 2B (.1.2) Lus10002697 [exp] 414 / 1e-143 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10000954 [exp] 412 / 6e-143 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10016537 [exp] 403 / 5e-139 AT2G28930 581 / 0.0 protein kinase 1B (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G020700 [exp] 558 / 0 AT1G14370 446 / 7e-156 PBS1-like 2, kinase 1, protein kinase 2A (.1) Potri.008G148000 [exp] 459 / 4e-161 AT2G02800 604 / 0.0 protein kinase 2B (.1.2) Potri.010G093700 [exp] 454 / 3e-159 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.008G056400 [exp] 427 / 2e-148 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 422 / 7e-147 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.016G094300 [exp] 421 / 2e-146 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.009G031300 [exp] 414 / 7e-144 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.001G240400 [exp] 414 / 2e-143 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G194700 [exp] 401 / 2e-137 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 401 / 2e-137 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10021489 pacid=23179147 polypeptide=Lus10021489 locus=Lus10021489.g ID=Lus10021489.BGIv1.0 annot-version=v1.0 ATGGGAAGCTTGGTTTTTAGTTACGTTGTCGATTGCTTCGTTTCAGAAAGTGGGAAGCTTCAGGATGATCCAAAACAAGTGACCAACTCTGATTCAAAGC GAACTACTGTTGAAAGCCTGAACAAGGCCCTGATAGCATCCAAGTTTGATGCATCTGTCCCCAGCAATCTCAAGTCCTTTAGCTTCAACGATCTAAGGAA TGCCACCAGGAACTTCAAGTCCGAAACATTGCTTGGAGAAGGAGGTTTCGGGTGCGTGTTCAAAGGGTGGATTGATGGTAACACTTTCGCACCTGCTAAA CCAGGAACTGGGATTGTTGTAGCAATCAAGAAGCTCAAGTCTGAGAGCTTCCAGGGCCACAAGGAGTGGTTGACTGAAGTGAACTATCTGGGTACGCTTC ATCATGAGAATCTAGTAAAACTCATCGGCTATTGCTCCGAGTCGGATAACAGGCTGCTGGTTTACGAGTTTATGCCTAAAGGGAGCTTGGAGAACCATTT GTTTAGAAAAGGTGTTCAGCCAATTGCTTGGGTAACACGGATGCAAATCGCACTTGACGTGGCGAGAGGGCTGTCCTTCTTACATGGATTAAGTGCCAAT GTAATCTATCGTGATCTCAAGGCATCAAATATTCTACTTGATTCGGGCTTTAATGCAAAGCTCTCTGATTTTGGATTAGCCAGAGATGGTCCTACCGGCG ATAACACTCATGTTTCGACGAGAGTAGTGGGAACTCGAGGTTATGCTGCACCCGAATACGTAGCTACAGGACACTTGACTCCTAAGAGCGATGTGTACAG TTTCGGTGTGGTGTTATTAGAGCTACTATCCGGAAGAAGGGCCATGGACGACGAGAGGGTTGGAGCTGTGGACGAAACCTTGGTGGACTGGGCAAGACCT TTCCTGACGGATAACAGGCGAGTTTTACGTATAATGGATACCCGGTTAGGGGGTCAGTACTCGAAGAAAGGAGCACAGGTTGCTGCAGCACTCGCGCTGC AATGCCTGTACACTGACCCCAAAAACCGGCCTTCCATGGTTCATGTTGTGGCCACGTTAGAGAACCTCAACAACCCTAAGGTGACACCAAGCACCCCACC TCCAGGAAGTCACGTGAGCAAGCATACGAATGGCCCTCAGCGAACGCCATCCAGGGGATCAAACTTGTCGTGA
AA sequence Show only first row Show all	>Lus10021489 pacid=23179147 polypeptide=Lus10021489 locus=Lus10021489.g ID=Lus10021489.BGIv1.0 annot-version=v1.0 MGSLVFSYVVDCFVSESGKLQDDPKQVTNSDSKRTTVESLNKALIASKFDASVPSNLKSFSFNDLRNATRNFKSETLLGEGGFGCVFKGWIDGNTFAPAK PGTGIVVAIKKLKSESFQGHKEWLTEVNYLGTLHHENLVKLIGYCSESDNRLLVYEFMPKGSLENHLFRKGVQPIAWVTRMQIALDVARGLSFLHGLSAN VIYRDLKASNILLDSGFNAKLSDFGLARDGPTGDNTHVSTRVVGTRGYAAPEYVATGHLTPKSDVYSFGVVLLELLSGRRAMDDERVGAVDETLVDWARP FLTDNRRVLRIMDTRLGGQYSKKGAQVAAALALQCLYTDPKNRPSMVHVVATLENLNNPKVTPSTPPPGSHVSKHTNGPQRTPSRGSNLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	0	1
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10022591 [exp]	1.0	0.9843
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030901 [exp]	2.2	0.9636
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10022292 [exp]	2.4	0.9670
					Lus10033269 [exp]	2.4	0.9686
AT1G11905			B-cell receptor-associated pro...		Lus10020025 [exp]	2.8	0.9655
AT5G53110			RING/U-box superfamily protein...		Lus10023086 [exp]	3.7	0.9608
AT5G46550			DNA-binding bromodomain-contai...		Lus10002784 [exp]	4.9	0.9545
AT1G67000			Protein kinase superfamily pro...		Lus10014923 [exp]	5.1	0.9451
AT2G10950			BSD domain-containing protein ...		Lus10039982 [exp]	6.0	0.9613
AT2G31870		PARG1, TEJ	Sanskrit for 'bright', poly\(A...		Lus10020902 [exp]	7.3	0.9476

Compare expression of checked genes

Lus10021489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.