Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37740 100 / 2e-24 C2H2ZnF ATZFP10, ZFP10 zinc-finger protein 10 (.1) AT5G06070 96 / 1e-23 C2H2ZnF RAB, RBE RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT4G17810 91 / 6e-22 C2H2ZnF ZFP12 C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G23130 81 / 6e-18 C2H2ZnF FLO10, FON1, SUP SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G42410 79 / 2e-17 C2H2ZnF ATZFP11, ZFP11 zinc finger protein 11 (.1) AT3G09290 64 / 3e-12 C2H2ZnF TAC1 telomerase activator1 (.1) AT3G53820 58 / 2e-10 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G43540 56 / 2e-09 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G24625 53 / 3e-08 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT5G57520 51 / 9e-08 C2H2ZnF ATZFP2, ZFP2 zinc finger protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024362 [exp] 126 / 1e-34 AT2G37740 105 / 4e-27 zinc-finger protein 10 (.1) Lus10010871 [exp] 126 / 2e-34 AT2G37740 103 / 9e-26 zinc-finger protein 10 (.1) Lus10004705 [exp] 105 / 3e-27 AT2G37740 100 / 1e-25 zinc-finger protein 10 (.1) Lus10030967 [exp] 92 / 9e-22 AT4G17810 112 / 1e-30 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10040083 [exp] 86 / 8e-20 AT4G17810 123 / 8e-35 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10022206 [exp] 85 / 4e-19 AT3G23130 100 / 1e-25 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021215 [exp] 86 / 1e-18 AT3G23130 102 / 1e-25 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10000481 [exp] 78 / 8e-17 AT4G17810 100 / 8e-26 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10004578 [exp] 77 / 1e-16 AT4G17810 95 / 6e-24 C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G101400 [exp] 120 / 6e-32 AT2G37740 108 / 3e-27 zinc-finger protein 10 (.1) Potri.006G089600 [exp] 119 / 1e-31 AT2G37740 102 / 2e-25 zinc-finger protein 10 (.1) Potri.010G199800 [exp] 114 / 6e-30 AT5G06070 100 / 4e-25 RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G059000 [exp] 113 / 3e-29 AT5G06070 99 / 2e-24 RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.001G142900 [exp] 99 / 1e-24 AT4G17810 135 / 1e-39 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.003G091200 [exp] 99 / 2e-24 AT4G17810 140 / 2e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G163900 [exp] 85 / 2e-19 AT3G23130 119 / 1e-33 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.002G041700 [exp] 79 / 2e-17 AT2G42410 105 / 3e-28 zinc finger protein 11 (.1) Potri.005G221400 [exp] 72 / 4e-15 AT2G42410 97 / 4e-25 zinc finger protein 11 (.1) Potri.016G101300 [exp] 68 / 7e-14 AT3G53820 92 / 2e-24 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021490 pacid=23179200 polypeptide=Lus10021490 locus=Lus10021490.g ID=Lus10021490.BGIv1.0 annot-version=v1.0 ATGGAGCAACCTTGGATGTGGAGTCTTGGTTCTGACAGCAACAATAACAAGCAGCCAAGGCGGCAAATCAACAATAGTTCCTCCTCTCATCTTTCTAACA TCCAGCCACTACTACCACAACCATCTAATAATAACAACTTTTTATCTTCTTCCTACGATGATGACTCATCGTGGGAAGAACAGGCCTTTGCAGAGGATGC TGCAGGGTCACATGGGGGATGCGTATGGCCTCCCAGGTCGTACTCGTGCACCTTTTGCCGACGGGAGTTTCGCTCTGCGCAAGCCCTAGGTGGGCACATG AATGTCCACAGGAGGGACCGAGCCAGACTCAAACAGTCTCCAATCGCTGACCCTCATCACCATCCTCCAATAATTCAACCGTATATCGGTTATCAATTCA CACTTGATCCCTCCCGCCTCCAGATTCCTACTTGTAGTTTTGTTTGTTCCAAAAATAGCCCTGATGATCCACCAGCTTCTTCATCACCTGACAACCCTAG GGTTTCCAGCTCCTCGGATCAGAAGACTTTTTTGCCCTCGGCAGCTGAAGAAGAGAGACAGCACAGGAAGAAGAGGCCCGCCACCCGCGGATTGGAAGTT GATATTGAAACAAAAGAGGAAAATTACACTAGAATTATTGATTCGGAAGAAGAGGCGGCGGTGATGAGATACAAGAGGAGGAGGAGGAGGTCATCGTCAT CGGAGTTACCTATCTTGGTGTTAAAGGGGTTGCCAGCTAAACTTCGTGAAGAGGTGCTTGAAGAAATGAACAAGACCAGTAAAACCCCTGGGGGTTGTTT GAGGGAGGAGTTAGATCTGGAACTCAGGCTTGGAAATCGGCCTACTAAGGTAAAAAGTGTTTAA
AA sequence Show only first row Show all	>Lus10021490 pacid=23179200 polypeptide=Lus10021490 locus=Lus10021490.g ID=Lus10021490.BGIv1.0 annot-version=v1.0 MEQPWMWSLGSDSNNNKQPRRQINNSSSSHLSNIQPLLPQPSNNNNFLSSSYDDDSSWEEQAFAEDAAGSHGGCVWPPRSYSCTFCRREFRSAQALGGHM NVHRRDRARLKQSPIADPHHHPPIIQPYIGYQFTLDPSRLQIPTCSFVCSKNSPDDPPASSSPDNPRVSSSSDQKTFLPSAAEEERQHRKKRPATRGLEV DIETKEENYTRIIDSEEEAAVMRYKRRRRRSSSSELPILVLKGLPAKLREEVLEEMNKTSKTPGGCLREELDLELRLGNRPTKVKSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10021490 [exp]	0	1
					Lus10014873 [exp]	1.7	0.9665
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10025749 [exp]	3.7	0.9515
AT3G26170		CYP71B19	"cytochrome P450, family 71, s...		Lus10018261 [exp]	4.5	0.9612
AT2G37050			Leucine-rich repeat protein ki...		Lus10004275 [exp]	7.7	0.9599
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034847 [exp]	9.2	0.9549
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10032745 [exp]	13.0	0.9546
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036820 [exp]	14.1	0.9525
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10036168 [exp]	16.4	0.9361
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10034668 [exp]	17.5	0.9287
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10020498 [exp]	17.7	0.9478

Compare expression of checked genes

Lus10021490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.