Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02040 291 / 4e-101 PRA1.A1 prenylated RAB acceptor 1.A1 (.1.2) AT5G05987 257 / 1e-87 PRA1.A2 prenylated RAB acceptor 1.A2 (.1) AT3G11397 253 / 5e-86 PRA1.A3 prenylated RAB acceptor 1.A3 (.1) AT3G11402 254 / 3e-79 Cysteine/Histidine-rich C1 domain family protein (.1.2) AT5G07110 40 / 0.0004 PRA1.B6 prenylated RAB acceptor 1.B6 (.1) AT5G01640 40 / 0.0007 PRA1.B5 prenylated RAB acceptor 1.B5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022592 [exp] 385 / 2e-138 AT5G02040 298 / 9e-104 prenylated RAB acceptor 1.A1 (.1.2) Lus10030160 [exp] 279 / 2e-96 AT5G05987 308 / 1e-107 prenylated RAB acceptor 1.A2 (.1) Lus10001021 [exp] 270 / 2e-92 AT5G05987 301 / 1e-104 prenylated RAB acceptor 1.A2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G091300 [exp] 332 / 2e-117 AT5G02040 320 / 1e-112 prenylated RAB acceptor 1.A1 (.1.2) Potri.010G198000 [exp] 294 / 3e-102 AT5G05987 253 / 3e-86 prenylated RAB acceptor 1.A2 (.1) Potri.008G060400 [exp] 291 / 4e-101 AT3G11397 266 / 4e-91 prenylated RAB acceptor 1.A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10021492 pacid=23179136 polypeptide=Lus10021492 locus=Lus10021492.g ID=Lus10021492.BGIv1.0 annot-version=v1.0 ATGGATTGGGGGACCGTAACGTCACAGGACCTGCTCGATGCACTCCGCGAAGTCGACTGGTCATCGCCGCCGCGCCCTCTCTCGGAATTCTTCTCCAGAT TCACCGTCCCTAAGTCCTCCGCCGCCTGGAACAGCCGCCTCAAATGCAACTTCTACTACTATCGCACGAATTACTTCCTTATGATCGTTCTAATTCTTGG AATCGGTTTCCTCAGAAGGCCGCTCTCCGTTGTCGCTGTTCTTTCGGCAGCTCTTTGCTTGGCTCTTCTGAATGACAGTTTTGCAGGGATCTTCAGCGAG AAAGTAACCAGAACCGTGAGGCAATTCTCTCCACATTTAGCAGCAAAGATGCGGCCTCCTCTTACACCTGTCATTCGCGGTCGTCGGTCTGCCAAGAGAC CAGTCTACATTTGTGGCCGGCCTCGTTGGATGTTCGTCACGGGGTTCTCATTTGTGAGTTTTCTGTTTTGGTATGTCTCGGGTGCACTCCTGATCCTTTC GTGGGCGCTTGCCGTGGGACTTCTTGGTACTATAACACATGCCAGTTTTAGAACACCTAATCTTAAAGCCCGGTTGAACACATTCAGAGAGGAATTTCGC GCTGTCTGGCGCAACTACAATGATCTGTAG
AA sequence Show only first row Show all	>Lus10021492 pacid=23179136 polypeptide=Lus10021492 locus=Lus10021492.g ID=Lus10021492.BGIv1.0 annot-version=v1.0 MDWGTVTSQDLLDALREVDWSSPPRPLSEFFSRFTVPKSSAAWNSRLKCNFYYYRTNYFLMIVLILGIGFLRRPLSVVAVLSAALCLALLNDSFAGIFSE KVTRTVRQFSPHLAAKMRPPLTPVIRGRRSAKRPVYICGRPRWMFVTGFSFVSFLFWYVSGALLILSWALAVGLLGTITHASFRTPNLKARLNTFREEFR AVWRNYNDL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02040		PRA1.A1	prenylated RAB acceptor 1.A1 (...		Lus10021492 [exp]	0	1
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Lus10015464 [exp]	2.4	0.8083
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10000513 [exp]	5.5	0.7881
AT2G36680			Modifier of rudimentary (Mod(r...		Lus10023888 [exp]	8.3	0.7776
AT3G59350			Protein kinase superfamily pro...		Lus10026708 [exp]	10.6	0.7729
AT4G39140			RING/U-box superfamily protein...		Lus10017978 [exp]	16.0	0.7715
AT3G62220			Protein kinase superfamily pro...		Lus10010072 [exp]	16.9	0.7213
AT3G58670			Protein of unknown function (D...		Lus10020711 [exp]	17.7	0.7156
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10034655 [exp]	19.1	0.7398
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10030491 [exp]	19.7	0.7569
AT1G55760			BTB/POZ domain-containing prot...		Lus10027101 [exp]	19.8	0.7619

Compare expression of checked genes

Lus10021492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.