Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37840 823 / 0 Protein kinase superfamily protein (.1.2) AT3G53930 778 / 0 Protein kinase superfamily protein (.1.2) AT3G61960 364 / 5e-117 Protein kinase superfamily protein (.1.2) AT1G49180 254 / 1e-77 protein kinase family protein (.1.2) AT2G30360 196 / 2e-55 PKS5, CIPK11, SnRK3.22, SIP4 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) AT5G01810 176 / 3e-48 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT4G14580 175 / 7e-48 CIPK4, SnRK3.3 SNF1-RELATED PROTEIN KINASE 3.3, CBL-interacting protein kinase 4 (.1) AT1G30270 176 / 1e-47 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT3G01090 174 / 8e-47 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) AT5G45820 171 / 3e-46 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022593 [exp] 1370 / 0 AT2G37840 855 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030182 [exp] 362 / 1e-115 AT3G61960 617 / 0.0 Protein kinase superfamily protein (.1.2) Lus10005135 [exp] 362 / 1e-115 AT3G61960 632 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033518 [exp] 289 / 8e-92 AT1G49180 353 / 2e-121 protein kinase family protein (.1.2) Lus10020855 [exp] 254 / 1e-76 AT1G49180 333 / 2e-111 protein kinase family protein (.1.2) Lus10025245 [exp] 191 / 2e-53 AT5G01820 504 / 1e-177 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) Lus10009103 [exp] 187 / 3e-52 AT2G30360 501 / 1e-176 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Lus10021852 [exp] 181 / 6e-50 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 177 / 2e-48 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G092900 [exp] 1024 / 0 AT2G37840 874 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G104900 [exp] 1014 / 0 AT2G37840 850 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G107000 [exp] 363 / 8e-116 AT3G61960 652 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G181000 [exp] 348 / 2e-109 AT3G61960 592 / 0.0 Protein kinase superfamily protein (.1.2) Potri.019G007200 [exp] 284 / 2e-90 AT1G49180 353 / 1e-121 protein kinase family protein (.1.2) Potri.019G011600 [exp] 283 / 2e-89 AT1G49180 352 / 9e-121 protein kinase family protein (.1.2) Potri.019G011300 [exp] 258 / 2e-80 AT1G49180 331 / 2e-113 protein kinase family protein (.1.2) Potri.016G133900 [exp] 180 / 1e-49 AT5G01820 490 / 2e-172 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) Potri.019G048800 [exp] 175 / 6e-48 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.018G108500 [exp] 174 / 1e-47 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10021493 pacid=23179222 polypeptide=Lus10021493 locus=Lus10021493.g ID=Lus10021493.BGIv1.0 annot-version=v1.0 ATGGCCCAGGGGACGGGAAGAGGAGGGAGAGTTGTAGGGGATTACATGGTCGGCCGGCAAATTGGGTCGGGTTCTTTCTCGGTGGTCTGGCATGCTAGGC ACCGGGTGCACGGGACGGAGGTGGCGATAAAGGAGATCGTTACTGGTAGACTTAATAAGAAGTTGCAGGACAGTCTCATGTCCGAGATCTTCATCTTGAA GCGGATTAATCATCCTAACATTATCCGCCTTCACGACATTATTGAGGTTCCTGGTAGAATACATATTGTGTTGGAGTACTGCAAAGGGGGCGATCTTTCC ATGTATATTCAACGCCATGGAAGAGTACCAGAAGCACTTGCTAAGCATTTTATGCAGCAATTAGCTACTGGCCTGCAAGTTCTCCGGGATAATAATCTCA TACACAGGGATCTAAAACCACAGAATCTCCTGCTGACCACTAATGACAAAAATGCCGTACTGAAAATTGCAGATTTTGGGTTTGCCAGATCTCTTCAACC TAGAGGTCTTGCTGAAACCTTGTGTGGTTCACCCCTTTACATGGCTCCAGAAATAATGCAACTGCAGAAGTATGATGCAAAGGCAGATCTCTGGAGCGTC GGAGCCATTTTATTCCAACTTGTGACTGCAAAGACCCCATTTACTGGGAGCAATCAAATACAGTTGCTCCAGAACATCATGAAATCAACTGACTTGCAAT TTCCACTAAATGTTAATGAGTTGAGTCCTGAGTGCAGAGATTTATGCCAGAAATTGCTGCGCCGAAATCCAGCTTCACATTTGTACACAGTGGAACGGTT AACTTTTGAGGAGTTCTTTAACCACCCTTTTCTTTCTCAAAGGGGAGCGGATGATTCACTGAGGAGTCAGAGACCTTCACCATCAGCAGATGGCTTTTCT TCCTCTGGAAACATTTCCGCGGAGAAGGACAGTCCACAGGAAGATTGTCTTCCATTTTTTCTGGAAGATGACTCTAGTGGTCCTGAGGGAAGTCCTTCTT TCTCTACTAGGAAGCCACCATCCATGAAGACCACTTATGGATTCTCTCTAGATACTAGATCTGATGGAAGGGATGCATCATCTAATGCTCTAAGTGGTGT AGGTATTACCTCAAGACATACTTCTGTCAGACGCCAGCCTGGAAATTCTATTGCTAGGCCTACCATCACTAAAATTTTGAATGAAAATCAAAGTGAAACA CCAAAGACTACAGAGCCTAAGCCAGCGAGCATCATAACAAGAGTCATTGATTCTATGGAGTTGATTGATCAAGATTATGTTTTGGTTTCTGGACCTCCTT TGGATTTATCTTCTTCGTTGGCAAGTAATTCGAAGACAAGTCACATACCATTTAAATGTGAGAGTGCCCCGGTAGCATCTGGCCATTTGATACCTACACA AAGCGTCCCTATGCCCATAGTTGGAGCTGGTAATCCTACTCTTGCCCGTATTGCAAGCATGGATAGTCCAGGCTCTGCTCCTGGTACATCTCAAGGATCT ACAGATATAGGAGATGCTATGGAGCATCCATCAAGTGACTGCATGACCAGGATCAAGTCTCTGCAGCAATGTGCCTCTACAATAACAGAACTCATCCAAG AAAAGGTTGATGTGGGTAGACATTTGGAAGCATTCTCTATCCAACTTGTCATCCTTGCGATTTGGAAGCAAGCCCTGCATATTTGCCATGCTCAAGCTGC ATCAGCAATTGAAGGAAGTCCAAGCCAGGAGACCATAAGACTACGGAGAAGCAACAGTAAGAAACACAGTACATCAGACGGAGAATGTTATTGTGATAAT ATTGGACCAGAGATGATCACCACTCAAATAGAGAAAGAATTTCTCCGGGAGGTTGAGCATGCTGAGGAGCTTGCTAATGCTATCGAACCTGGTAGTACAG AGATGCCAGATGCGCTGGAGACTATTTTTCAATCTGCTCTAGCACTAGGAAGAAATGGAGGGGTAGATGAGCTCATGGGGGATATGGAAAGCGCAACTTT GTTATACTCGAAAGCAGTTAGGTTGCTGGTATTCCTTCTAGTGGAAGCGCCTTCCCTAATTCTGAACCCACCATTTTCTCTCACGAACTCAGACCGGTAT AGGCTCCGCAACTATATCGACATCCTTAACAATCGGCAGGGATATTCTCGGTCCCAAAGGATGGCGCTTCTGAAATGCGAGGATCAGTAG
AA sequence Show only first row Show all	>Lus10021493 pacid=23179222 polypeptide=Lus10021493 locus=Lus10021493.g ID=Lus10021493.BGIv1.0 annot-version=v1.0 MAQGTGRGGRVVGDYMVGRQIGSGSFSVVWHARHRVHGTEVAIKEIVTGRLNKKLQDSLMSEIFILKRINHPNIIRLHDIIEVPGRIHIVLEYCKGGDLS MYIQRHGRVPEALAKHFMQQLATGLQVLRDNNLIHRDLKPQNLLLTTNDKNAVLKIADFGFARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSV GAILFQLVTAKTPFTGSNQIQLLQNIMKSTDLQFPLNVNELSPECRDLCQKLLRRNPASHLYTVERLTFEEFFNHPFLSQRGADDSLRSQRPSPSADGFS SSGNISAEKDSPQEDCLPFFLEDDSSGPEGSPSFSTRKPPSMKTTYGFSLDTRSDGRDASSNALSGVGITSRHTSVRRQPGNSIARPTITKILNENQSET PKTTEPKPASIITRVIDSMELIDQDYVLVSGPPLDLSSSLASNSKTSHIPFKCESAPVASGHLIPTQSVPMPIVGAGNPTLARIASMDSPGSAPGTSQGS TDIGDAMEHPSSDCMTRIKSLQQCASTITELIQEKVDVGRHLEAFSIQLVILAIWKQALHICHAQAASAIEGSPSQETIRLRRSNSKKHSTSDGECYCDN IGPEMITTQIEKEFLREVEHAEELANAIEPGSTEMPDALETIFQSALALGRNGGVDELMGDMESATLLYSKAVRLLVFLLVEAPSLILNPPFSLTNSDRY RLRNYIDILNNRQGYSRSQRMALLKCEDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37840			Protein kinase superfamily pro...		Lus10021493 [exp]	0	1
AT1G07650			Leucine-rich repeat transmembr...		Lus10031374 [exp]	3.5	0.8788
AT3G51830		ATG5, SAC8	SAC domain-containing protein ...		Lus10025267 [exp]	4.7	0.8848
AT5G62760			P-loop containing nucleoside t...		Lus10042176 [exp]	5.0	0.8552
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004596 [exp]	6.6	0.8898
AT1G32810			RING/FYVE/PHD zinc finger supe...		Lus10017342 [exp]	12.6	0.8209
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10009279 [exp]	15.2	0.8134
AT2G23890			HAD-superfamily hydrolase, sub...		Lus10015485 [exp]	15.5	0.8765
AT2G03070		MED8	mediator subunit 8 (.1)		Lus10035721 [exp]	17.3	0.8483
AT1G23030		PUB11	ARM repeat superfamily protein...		Lus10013745 [exp]	19.2	0.8150
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Lus10008803 [exp]	21.0	0.8297

Compare expression of checked genes

Lus10021493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.