Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18650 53 / 1e-08 MADS AGL103 AGAMOUS-like 103 (.1) AT4G11250 50 / 8e-08 MADS AGL52 AGAMOUS-like 52 (.1) AT4G02235 49 / 1e-07 MADS AGL51 AGAMOUS-like 51 (.1) AT5G38740 50 / 2e-07 MADS AGL77 AGAMOUS-like 77 (.1) AT5G40120 49 / 2e-07 MADS AGL76 AGAMOUS-like 76 (.1) AT5G65330 49 / 3e-07 MADS AGL78 AGAMOUS-like 78 (.1) AT5G40220 48 / 6e-07 MADS AGL43 AGAMOUS-like 43 (.1) AT5G39810 47 / 9e-07 MADS AGL98 AGAMOUS-like 98 (.1) AT5G39750 47 / 1e-06 MADS AGL81, EMB3008 EMBRYO DEFECTIVE 3008, AGAMOUS-like 81 (.1) AT5G41200 47 / 2e-06 MADS AGL75 AGAMOUS-like 75 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022594 [exp] 238 / 2e-81 AT3G18650 61 / 2e-11 AGAMOUS-like 103 (.1) Lus10024347 [exp] 121 / 4e-35 AT3G18650 63 / 8e-12 AGAMOUS-like 103 (.1) Lus10012656 [exp] 82 / 5e-21 AT3G18650 59 / 9e-12 AGAMOUS-like 103 (.1) Lus10039704 [exp] 40 / 0.0004 AT1G77980 89 / 7e-21 AGAMOUS-like 66 (.1) Lus10018493 [exp] 40 / 0.0004 AT1G77980 88 / 2e-20 AGAMOUS-like 66 (.1) Lus10001273 [exp] 40 / 0.0006 AT3G15850 142 / 1e-38 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G238900 [exp] 52 / 2e-08 AT3G18650 66 / 1e-12 AGAMOUS-like 103 (.1) Potri.004G222200 [exp] 50 / 7e-08 AT5G41200 65 / 5e-12 AGAMOUS-like 75 (.1) Potri.015G077800 [exp] 47 / 1e-06 AT4G02235 45 / 7e-06 AGAMOUS-like 51 (.1) Potri.008G020300 [exp] 45 / 4e-06 AT3G18650 75 / 3e-15 AGAMOUS-like 103 (.1) Potri.007G120002 [exp] 40 / 5e-05 AT1G77980 97 / 1e-25 AGAMOUS-like 66 (.1) Potri.002G105600 [exp] 42 / 9e-05 AT2G22540 288 / 3e-99 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.005G155300 [exp] 40 / 0.0002 AT2G22540 234 / 8e-78 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10021494 pacid=23179169 polypeptide=Lus10021494 locus=Lus10021494.g ID=Lus10021494.BGIv1.0 annot-version=v1.0 ATGTTTCCAACTCTATCTCTGAAGAAGAGGAGAAGAACCCTGAAGAAGAAAGCAGAGGAGCTCTCAACCCTCTGCGGCATCGACGTTGCTTACGTATGCT TCGAACCCAACGGCAGAGTCGATACCTGGCCGGAGGACCCTAGCAAGGTTAAAGACATCATTCTCAAGTACAACGAGCTCAAATCCAACGATACCCCTTC TTCCTCTTCCCCTGTCTCTTCTTCTGGCACAACCCACAATGACATCGGCAGTGGGGATATTGGAGAGTTAGAAAGTTTGAGACTTGGAATCAACGAACTT TCCCAGGAGGAGTTGGCTGTGGTGCTTAAATTGGCAGACCGGAAGTTGGAGAGATTGAGAGAGGAAATTGCGAGTTTGGAGCGCAACGGGGAAACCTCGA CGAGAAAGAGGCTAGTAGGCGGAGAGCTGAAGACAGCCAATTTGATAGATTTGGTAGGTTTGTCGACGGAAACAGAGCAAGAGGCCTAA
AA sequence Show only first row Show all	>Lus10021494 pacid=23179169 polypeptide=Lus10021494 locus=Lus10021494.g ID=Lus10021494.BGIv1.0 annot-version=v1.0 MFPTLSLKKRRRTLKKKAEELSTLCGIDVAYVCFEPNGRVDTWPEDPSKVKDIILKYNELKSNDTPSSSSPVSSSGTTHNDIGSGDIGELESLRLGINEL SQEELAVVLKLADRKLERLREEIASLERNGETSTRKRLVGGELKTANLIDLVGLSTETEQEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Lus10021494 [exp]	0	1
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10013549 [exp]	33.9	0.8697
AT2G28410			unknown protein		Lus10021476 [exp]	34.9	0.8636
AT1G76250			unknown protein		Lus10016006 [exp]	39.2	0.8618
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10014104 [exp]	41.9	0.8648
AT4G35070			SBP (S-ribonuclease binding pr...		Lus10013569 [exp]	43.8	0.8613
AT1G35830			VQ motif-containing protein (....		Lus10006941 [exp]	56.9	0.8585
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Lus10021731 [exp]	62.2	0.8564
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10041267 [exp]	64.9	0.8534
AT5G15870			glycosyl hydrolase family 81 p...		Lus10042525 [exp]	76.6	0.8470
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10015740 [exp]	84.9	0.8456

Compare expression of checked genes

Lus10021494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.