Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37880 207 / 4e-68 Protein of unknown function, DUF617 (.1) AT1G21050 137 / 1e-40 Protein of unknown function, DUF617 (.1) AT1G76610 131 / 1e-38 Protein of unknown function, DUF617 (.1) AT5G65340 122 / 9e-35 Protein of unknown function, DUF617 (.1) AT3G25640 121 / 2e-34 Protein of unknown function, DUF617 (.1) AT5G23100 117 / 8e-33 Protein of unknown function, DUF617 (.1) AT5G06990 116 / 2e-32 Protein of unknown function, DUF617 (.1) AT2G41660 116 / 5e-32 MIZ1 mizu-kussei 1, Protein of unknown function, DUF617 (.1) AT2G22460 107 / 3e-29 Protein of unknown function, DUF617 (.1) AT5G42680 101 / 7e-27 Protein of unknown function, DUF617 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022595 [exp] 188 / 6e-61 AT2G37880 124 / 1e-34 Protein of unknown function, DUF617 (.1) Lus10027241 [exp] 125 / 6e-36 AT5G23100 270 / 1e-90 Protein of unknown function, DUF617 (.1) Lus10019166 [exp] 123 / 5e-35 AT3G25640 258 / 2e-86 Protein of unknown function, DUF617 (.1) Lus10000863 [exp] 122 / 1e-34 AT5G23100 276 / 3e-93 Protein of unknown function, DUF617 (.1) Lus10034386 [exp] 122 / 1e-34 AT3G25640 268 / 3e-90 Protein of unknown function, DUF617 (.1) Lus10031059 [exp] 116 / 6e-32 AT2G41660 258 / 4e-85 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10009615 [exp] 113 / 3e-31 AT5G23100 258 / 4e-86 Protein of unknown function, DUF617 (.1) Lus10035443 [exp] 114 / 5e-31 AT2G41660 248 / 4e-81 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10018050 [exp] 103 / 2e-27 AT2G41660 171 / 1e-51 mizu-kussei 1, Protein of unknown function, DUF617 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G091700 [exp] 234 / 2e-79 AT2G37880 217 / 2e-71 Protein of unknown function, DUF617 (.1) Potri.002G002000 [exp] 141 / 2e-42 AT1G21050 236 / 1e-78 Protein of unknown function, DUF617 (.1) Potri.005G259300 [exp] 141 / 2e-42 AT1G21050 241 / 2e-80 Protein of unknown function, DUF617 (.1) Potri.010G131600 [exp] 134 / 3e-39 AT3G25640 249 / 1e-82 Protein of unknown function, DUF617 (.1) Potri.008G114500 [exp] 131 / 3e-38 AT3G25640 228 / 2e-74 Protein of unknown function, DUF617 (.1) Potri.012G058300 [exp] 130 / 5e-38 AT5G23100 261 / 7e-88 Protein of unknown function, DUF617 (.1) Potri.015G053000 [exp] 128 / 4e-37 AT5G23100 293 / 3e-100 Protein of unknown function, DUF617 (.1) Potri.006G048800 [exp] 125 / 4e-36 AT2G41660 241 / 3e-79 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.001G031900 [exp] 124 / 1e-35 AT5G06990 275 / 6e-93 Protein of unknown function, DUF617 (.1) Potri.003G193700 [exp] 121 / 1e-34 AT5G06990 328 / 6e-114 Protein of unknown function, DUF617 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04759 [flax] [poplar] DUF617 Protein of unknown function, DUF617
Representative CDS sequence Show only first row Show all	>Lus10021495 pacid=23179180 polypeptide=Lus10021495 locus=Lus10021495.g ID=Lus10021495.BGIv1.0 annot-version=v1.0 ATGGTGATCGGAACCATCTTCGGCACCCGCCGCGGCCACGTCTGGCTATGTTTCCAGCACGACCGCCTCTCCACCGCCAAACCTTTGCTCCTCCTCGAGC TCTCAACTCCGACACACCAGCTCGTCGGGGAGATGAAATGTGGCCTCGTCCGGGTCGCACTCGAATGCACCCGACCCGAATTCCGATCATGGCCGCTCCG CTCCGTGCCCGTCTGGAACGTCAACTGCAATGGGAAGAAGCTGGGGTTCGCCGCCAGGAGGAAGCCGACCGAGCAGAATCGGCAGATGCTCAAGACAATG CAGTCCATGACTGTGGGGGCCGGGGTGATCCCTGCCGGCGGCTGTTCGCCGGAGGAGATCATGTACATGAGGGCGAATTACGAGCATGTTGTTGGCAGCG CTGATTCGGAGTCGTTTCGCCTTATTGATTCTGTCCACGGGGACTGCTGCGGTCAAGAACTTGGCGTCTTCTTGATCAGGAGCTGCTGA
AA sequence Show only first row Show all	>Lus10021495 pacid=23179180 polypeptide=Lus10021495 locus=Lus10021495.g ID=Lus10021495.BGIv1.0 annot-version=v1.0 MVIGTIFGTRRGHVWLCFQHDRLSTAKPLLLLELSTPTHQLVGEMKCGLVRVALECTRPEFRSWPLRSVPVWNVNCNGKKLGFAARRKPTEQNRQMLKTM QSMTVGAGVIPAGGCSPEEIMYMRANYEHVVGSADSESFRLIDSVHGDCCGQELGVFLIRSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37880			Protein of unknown function, D...		Lus10021495 [exp]	0	1
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10035700 [exp]	1.0	0.9442
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Lus10040339 [exp]	4.4	0.8972
					Lus10007903 [exp]	4.6	0.8927
AT2G02120		PDF2.1, LCR70	LOW-MOLECULAR-WEIGHT CYSTEINE-...		Lus10039622 [exp]	7.1	0.8255
					Lus10009804 [exp]	7.5	0.8146
AT5G51280			DEAD-box protein abstrakt, put...		Lus10012900 [exp]	7.6	0.9138
AT4G03230			S-locus lectin protein kinase ...		Lus10033752 [exp]	8.2	0.8671
AT4G29250			HXXXD-type acyl-transferase fa...		Lus10028335 [exp]	8.3	0.9098
AT5G45650			subtilase family protein (.1)		Lus10026062 [exp]	13.1	0.9045
AT3G19540			Protein of unknown function (D...		Lus10028040 [exp]	14.8	0.9030

Compare expression of checked genes

Lus10021495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.