Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53940 441 / 3e-155 Mitochondrial substrate carrier family protein (.1) AT2G37890 408 / 8e-143 Mitochondrial substrate carrier family protein (.1) AT3G55640 395 / 5e-138 Mitochondrial substrate carrier family protein (.1) AT4G01100 180 / 1e-53 ADNT1 adenine nucleotide transporter 1 (.1.2) AT4G26180 161 / 2e-46 Mitochondrial substrate carrier family protein (.1) AT5G51050 160 / 7e-45 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT4G32400 151 / 3e-42 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT5G64970 147 / 3e-40 Mitochondrial substrate carrier family protein (.1) AT3G51870 146 / 3e-40 Mitochondrial substrate carrier family protein (.1) AT5G61810 144 / 4e-40 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022597 [exp] 606 / 0 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1) Lus10024344 [exp] 439 / 9e-156 AT3G53940 417 / 4e-147 Mitochondrial substrate carrier family protein (.1) Lus10004689 [exp] 408 / 7e-143 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10012658 [exp] 353 / 4e-122 AT3G53940 327 / 5e-112 Mitochondrial substrate carrier family protein (.1) Lus10040257 [exp] 294 / 1e-98 AT3G55640 358 / 2e-124 Mitochondrial substrate carrier family protein (.1) Lus10032365 [exp] 188 / 1e-56 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 186 / 2e-55 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 182 / 4e-54 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 172 / 2e-50 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G091900 [exp] 493 / 3e-176 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 486 / 1e-173 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 420 / 1e-147 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.010G197400 [exp] 416 / 5e-146 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.014G095400 [exp] 191 / 1e-57 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 186 / 1e-55 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.001G094100 [exp] 184 / 3e-55 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 184 / 3e-55 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.006G226300 [exp] 157 / 1e-44 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.012G110700 [exp] 159 / 3e-44 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10021497 pacid=23179234 polypeptide=Lus10021497 locus=Lus10021497.g ID=Lus10021497.BGIv1.0 annot-version=v1.0 ATGGATGCTAGGGTCGGTGTGGTGGTTGAAGGAGGGCAACGAGCCCTCAATTCGGCCGCCGCCGCAGCTCATGGAACGGTGGTCGATGCCGGTGCCCGCA AGTTCCTTCAGCAGCAGGGCCAAACTCACAGTAAACCGCCTGCGCCACAGCCTTCCTCTTTCAGCCAGCAGCAGGCCCCGCTTGGAAGCGTGCAGCACAT GCTCGCCGGTGGGGTTGCCGGAGCCTTTAGCAAAACCTGCACTGCTCCAATGGGTCGACTTACAATCCTCTTCCAGATTCAGGGGATGCACTCTGATGTT ACAGCATTGAGCAGGCCTTGTGTCTGGCGGGAAGCTTGTCGAATTTTTAACGAAGAAGGGTTTAGAGCATTTTGGAGAGGCAATCTTGTCACCATCGTTC ACCGTGTTCCCTACTCTGCAGTCAACTTTTATGCCTACGAAGAATACAAGACCTTCTTGCAGTCAGTTTTTGGACTGGAACGACAAGGGGGAAATTCAAC TGCAGACTTAGCTGTCCGTTTTCTAGGTGGAGGGTTGGCTGGGATATCAGCTGCCTCGGCCACATATCCCTTGGATCTTGTGAGGACACGTTTAGCCGCA CAGAGAGACACAATCTACTATCGAGGTATCTGGGGTTCCTTCCGTACCATATGCAAAGAGGAAGGATACTTAGGATTATATAAAGGAGTTGGGCCTACTT TATTGGGTGTTGGACCAAATCTAGCCATAGGATTCTGTGTATACGAGTCTCTCAAATCATTTTGGGAATCTCAAAGGCCAAACGATTCCACCACCATGGT TAGTCTTAGTTGTGGCAGCCTTTCTGGCATTGCTGCGTCAACTGCGACATTTCCCATTGATCTTGTACGGAGAAGAATGCAGTTAGAAGGTGCTGGCGGT AAAGCCCGCGTGTACACTGGGGGTTTGCTTGGGACATTTCAGCATATAATCAAGAATGAAGGCCTGCTAGGCTTGTACAGGGGTATCCTTCCTGAATACT ATAAGGTGGTCCCTGGTGTTGCCATCGTCTTCATGACCTACGAGACATTAAAAGTAGCTCTGTCTGGTTCTCCCTCCTAG
AA sequence Show only first row Show all	>Lus10021497 pacid=23179234 polypeptide=Lus10021497 locus=Lus10021497.g ID=Lus10021497.BGIv1.0 annot-version=v1.0 MDARVGVVVEGGQRALNSAAAAAHGTVVDAGARKFLQQQGQTHSKPPAPQPSSFSQQQAPLGSVQHMLAGGVAGAFSKTCTAPMGRLTILFQIQGMHSDV TALSRPCVWREACRIFNEEGFRAFWRGNLVTIVHRVPYSAVNFYAYEEYKTFLQSVFGLERQGGNSTADLAVRFLGGGLAGISAASATYPLDLVRTRLAA QRDTIYYRGIWGSFRTICKEEGYLGLYKGVGPTLLGVGPNLAIGFCVYESLKSFWESQRPNDSTTMVSLSCGSLSGIAASTATFPIDLVRRRMQLEGAGG KARVYTGGLLGTFQHIIKNEGLLGLYRGILPEYYKVVPGVAIVFMTYETLKVALSGSPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53940			Mitochondrial substrate carrie...		Lus10021497 [exp]	0	1
AT2G36350			Protein kinase superfamily pro...		Lus10035591 [exp]	1.0	0.9249
AT3G53940			Mitochondrial substrate carrie...		Lus10022597 [exp]	2.8	0.9131
AT5G07900			Mitochondrial transcription te...		Lus10040817 [exp]	4.6	0.8885
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Lus10030451 [exp]	7.7	0.8695
AT1G48620		HON5	high mobility group A5 (.1)		Lus10028911 [exp]	8.5	0.8784
AT3G26782			Tetratricopeptide repeat (TPR)...		Lus10031989 [exp]	9.0	0.8743
AT3G52110			unknown protein		Lus10029522 [exp]	10.0	0.8836
AT1G52310			protein kinase family protein ...		Lus10040381 [exp]	14.1	0.8579
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10007236 [exp]	15.2	0.8782
AT2G31340		EMB1381	embryo defective 1381 (.1)		Lus10035336 [exp]	22.7	0.8701

Compare expression of checked genes

Lus10021497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.