Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02030 305 / 1e-95 HD PNY, BLR, BLH9, RPL, HB-6, VAN, LSN VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) AT2G27990 244 / 2e-72 HD PNF, BLH8 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) AT4G34610 228 / 5e-67 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT2G16400 224 / 3e-66 HD BLH7 BEL1-like homeodomain 7 (.1) AT4G36870 224 / 1e-63 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT1G75410 217 / 6e-63 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT1G19700 214 / 1e-61 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT2G23760 211 / 4e-60 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT2G27220 203 / 8e-59 HD BLH5 BEL1-like homeodomain 5 (.1.2) AT2G35940 204 / 5e-57 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022599 [exp] 895 / 0 AT5G02030 339 / 7e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10021452 [exp] 235 / 2e-70 AT2G27990 282 / 7e-89 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Lus10004688 [exp] 233 / 3e-70 AT5G02030 209 / 9e-62 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10016110 [exp] 234 / 7e-70 AT2G27990 282 / 1e-88 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Lus10040256 [exp] 231 / 2e-69 AT2G27990 204 / 3e-60 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Lus10004201 [exp] 224 / 4e-64 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10029405 [exp] 221 / 3e-63 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10017481 [exp] 216 / 2e-61 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2) Lus10000184 [exp] 215 / 5e-61 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G197300 [exp] 261 / 7e-80 AT5G02030 241 / 4e-73 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Potri.008G061000 [exp] 259 / 3e-79 AT5G02030 235 / 9e-71 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Potri.009G009900 [exp] 260 / 1e-76 AT2G27990 262 / 2e-77 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Potri.009G009800 [exp] 260 / 2e-76 AT2G27990 280 / 5e-84 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Potri.004G213300 [exp] 257 / 3e-75 AT2G27990 253 / 3e-74 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Potri.016G069700 [exp] 234 / 5e-68 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.009G017400 [exp] 234 / 1e-67 AT2G35940 310 / 4e-95 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.006G203000 [exp] 232 / 3e-67 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.007G032700 [exp] 230 / 2e-65 AT4G36870 475 / 7e-157 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Potri.004G159300 [exp] 225 / 1e-64 AT4G34610 416 / 2e-138 BEL1-like homeodomain 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07526 [flax] [poplar] POX Associated with HOX CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10021498 pacid=23179140 polypeptide=Lus10021498 locus=Lus10021498.g ID=Lus10021498.BGIv1.0 annot-version=v1.0 ATGGCGGACGGTTACGAGCCCTACCATGTCCCACAACAAAGCAGAAGAGATAAGCTCAGAGATCAGCTTCTTCATCATCATCATCATCACCATCATCTTG TGGCTCACAATCAAAATAACAACTCCGCCCACCTCCTTCCTCCCCCTCTTCCTCCTCATCTCTATGATCCTCCTTCCTCCAATTTCACTGGATTCATCAG TCCCAATTACATGGACTCCGCCAATTCCTCCAACCTCCCAACCTTAAACCCTACCGACACCAGTATCCACTCACAATCCCCAAACCCCTTCCTCAATTTT CACCCTTCCCGTGCCACCGGAGGAGCTCTACTCTTCAAGCCTGAGCCCCTTTCTCTCTCCTTATCTTCTTCTTCCCACCACCAACAACAACACCAGCAGC AGCACCACGACGGTCTCAACTTCCAGAGCTACGTCCTTCCGACCACCAGCATTAATGTCGACGGAGGAGGAGGAGACGCCGTCGCTTCCAGATGCTCTGT CGACGACGTCCTCCCGCTCGGCCCTTTCACCGGCTACGCCTCCGTTCTTAAAGGATCCAGGTTCCTCAACCCTGCTCAGCAGCTTCTCGAGGAGTTCTGT GACGTTGTCGGCGGCGGATTACTATTCCCGGCGGCGGGGGAAAAGATTTCCCCCGACCCTTCTTTACTGGATCCGCCGCTTGACGACGTCGATCCCCTTT CTTGTGGGTCGGAATTTGGAGCTGAATCCCGCAGGAAAAAGTCCCGGCTGATTTCCATGCTCGACGAGGTGTACAGGAGGTACAAGCAATACTACCAGCA GATGGAAGCAGTAGTAACATCCTTTGAATGCGTGGCTGGGCTTGGGAACGCTGCTCCGTATGCGAACCTGGCTCTGAAAGCCATGTCCAAGCACTTCCGT TCCTTGAAGAATGCCATCACTGACCAGCTCTCCAAAGCTTCTTTAGGAAAATCAGATGATCATGCTCTTGCCTCCGGTACTGTCAAACTCGGTAGCTATG GCATCAGTAGGCATAATGGTCAGAGTTCAGGACTCATCGAACATCACCAGCCAGTTTGGCGGCCACAAAGGGGACTCCCTGAACGTGCTGTCACCGTCCT TCGAGCATGGCTCTTTGAACACTTCTTGCATCCGTACCCGACCGATACAGACAAGCTAATGCTGGCGAAACAAACGGGTCTTTCACGAAGTCAGGTATCG AATTGGTTCATCAATGCGAGGGTTAGGCTATGGAAGCCAATGGTGGAAGAGATACACACGTTGGAGACCCGGCAGGCACAGAAGGCTGCCCATAAAGACG ATCATCAGCGTAACAAGTCGACTACTACCGATCATCACCAGCAACCACCCTACTCGAATTCTGATGCCGCTGCCGGCGGAAGCAACCCTTCAACATCATC TCAACCTGCAGCGTTCGACGTGCCAATACCAAAGCGTACACGAAACGAACTTCCTCCAGCTGATCACATGTCAGTTGGGAGCAACGAGGACCACCAGCAA CATCAGCATCAACATCAACAGATGTATAATAATACTAGTAATAATAACATGCAGTCTTATGGCGGCGGGGGGTTTTCAGGTGGGCATTTGGGAATGGAAG CTGGTGGTGGCGGAGTAGTCGGAGGTGTGTCGTTGACGCTGGGTCTTCACCAACACCACCACCAAGGGATAGGGTTTTTGGAACCGCCGCCCTTCTCTAT AACATCTGTGGCGGCGCAACGGTTTGGTTTGGATACCGGCGGGGTTAGTGAAGGGTATAATGTGATGGAGGGTGGCGGCGGTGGCGGCGGTAGTGGTTTC GATTCTTCACAGAACAGGCATTTTGGGCGAGACGTCATGGGTGGTCAACTCTTGCATGATTTCGTCGGCTGA
AA sequence Show only first row Show all	>Lus10021498 pacid=23179140 polypeptide=Lus10021498 locus=Lus10021498.g ID=Lus10021498.BGIv1.0 annot-version=v1.0 MADGYEPYHVPQQSRRDKLRDQLLHHHHHHHHLVAHNQNNNSAHLLPPPLPPHLYDPPSSNFTGFISPNYMDSANSSNLPTLNPTDTSIHSQSPNPFLNF HPSRATGGALLFKPEPLSLSLSSSSHHQQQHQQQHHDGLNFQSYVLPTTSINVDGGGGDAVASRCSVDDVLPLGPFTGYASVLKGSRFLNPAQQLLEEFC DVVGGGLLFPAAGEKISPDPSLLDPPLDDVDPLSCGSEFGAESRRKKSRLISMLDEVYRRYKQYYQQMEAVVTSFECVAGLGNAAPYANLALKAMSKHFR SLKNAITDQLSKASLGKSDDHALASGTVKLGSYGISRHNGQSSGLIEHHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRSQVS NWFINARVRLWKPMVEEIHTLETRQAQKAAHKDDHQRNKSTTTDHHQQPPYSNSDAAAGGSNPSTSSQPAAFDVPIPKRTRNELPPADHMSVGSNEDHQQ HQHQHQQMYNNTSNNNMQSYGGGGFSGGHLGMEAGGGGVVGGVSLTLGLHQHHHQGIGFLEPPPFSITSVAAQRFGLDTGGVSEGYNVMEGGGGGGGSGF DSSQNRHFGRDVMGGQLLHDFVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10021498 [exp]	0	1
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10022599 [exp]	1.0	0.9649
AT3G27390			unknown protein		Lus10032110 [exp]	2.2	0.9162
AT3G21670			Major facilitator superfamily ...		Lus10035317 [exp]	2.8	0.9320
AT1G55110	C2H2ZnF	ARABIDOPSISTHAL...	indeterminate(ID)-domain 7 (.1...		Lus10029904 [exp]	4.2	0.9068
AT4G02405			S-adenosyl-L-methionine-depend...		Lus10015003 [exp]	5.5	0.9114
AT4G39110			Malectin/receptor-like protein...		Lus10017478 [exp]	5.8	0.8884
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10007774 [exp]	6.0	0.8985
AT1G16380		ATCHX1	CATION EXCHANGER 1, Cation/hyd...		Lus10024132 [exp]	7.3	0.8820
AT5G52450			MATE efflux family protein (.1...		Lus10029668 [exp]	7.9	0.9095
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Lus10040686 [exp]	9.0	0.9195

Compare expression of checked genes

Lus10021498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.