Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02010 599 / 0 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT5G05940 541 / 0 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT4G38430 441 / 2e-147 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT3G55660 441 / 2e-147 ATROPGEF6, ROPGEF6 ROP (rho of plants) guanine nucleotide exchange factor 6 (.1) AT4G00460 415 / 1e-138 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2) AT1G01700 405 / 1e-134 ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 (.1) AT2G45890 370 / 3e-121 RHS11, ATROPGEF4, ROPGEF4 ROOT HAIR SPECIFIC 11, RHO guanyl-nucleotide exchange factor 4 (.1) AT3G24620 362 / 3e-117 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT1G79860 355 / 9e-115 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) AT1G52240 353 / 7e-113 PIRF1, ATROPGEF11, ROPGEF11 phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022601 [exp] 1215 / 0 AT5G02010 662 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10040248 [exp] 568 / 0 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10004676 [exp] 566 / 0 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10009874 [exp] 553 / 0 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10000399 [exp] 542 / 0 AT5G05940 630 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10023983 [exp] 446 / 9e-149 AT4G38430 696 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10025101 [exp] 443 / 7e-148 AT4G38430 683 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10005644 [exp] 402 / 7e-133 AT4G38430 520 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10021234 [exp] 397 / 1e-130 AT4G38430 525 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G092600 [exp] 753 / 0 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.016G104400 [exp] 739 / 0 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.008G062000 [exp] 613 / 0 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.010G196000 [exp] 602 / 0 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.004G179742 [exp] 454 / 1e-152 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.009G140100 [exp] 453 / 4e-152 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.005G247100 [exp] 431 / 9e-144 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.014G084200 [exp] 420 / 2e-140 AT4G00460 673 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.002G159700 [exp] 420 / 2e-140 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.002G014100 [exp] 422 / 4e-140 AT4G38430 592 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [flax] [poplar] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Lus10021500 pacid=23179206 polypeptide=Lus10021500 locus=Lus10021500.g ID=Lus10021500.BGIv1.0 annot-version=v1.0 ATGGATAGAGCTTTCATTCACCAACAAGAAAGAGAAACAGAACCTAACGATAACCTCCTTTGTTGTGCTCCTCCCTTCTGTGTACTAGCTAAGAAGAAGA CCAAGAAGAAGAAGAAGAACACTAGTTGTTCCTTTTCTTTATTCGGGCTCCAGGTCTCAAAGTACGTGCTTCTGCATTGGTGCTCCGACTCCGACAAAGC TCGCTCCTCGATTCCCGCTACTGGGTTTTTCTCCCTCGGGAAGATTAATAATAATAACTTGAGTGGTGGTATGGTTGTGATGAACAACTCTGTTTTCTGT CACTCCCCTCACGGAGGAGAAGAGGGTTTCATGGCGAATCCAGTTCGGACATTTGGGGAGTTTATGGAGGAGAAATACAGGGAGAGCAGTTCCAGCTCCG ATTTCTTGACCTCGGAGGCTACAGGGATCGAGGATTTACATAGCCGTTACAGCTCCGGCGAGGAGTCGAACTCGCCGGCGCCGTCGTCGTCTTTGGGTTG GAGAAAAGATGAAGAAGTTCCTGATTGTACCAGCACTACTGTCTCCACAGAGAAGGCGCATTTGGCCGATGCAAGGAAATCGGAAGAACACAGCTCTTCA ATTTCTGAGATAGAGATGATGAAGGAAAGGTTCTCGAAGCTGCTGCTTGGCGAAGATATGTCAGGCTGTGGAAATGGGGTTTGTACTGCTTTAGCTGTTT CAAACGCCATTACTAATCTCTGCGCTACTTTGTTTGGGCAACTATGGAGGTTGGAGCCTTTACCTTTTGAGAAAAAGGCTATGTGGAGGAGAGAGATGGA GTGGCTCCTCTGTGTCAGTGACCACATTGTTGAATTGATTCCTTCTTGGCAGACATTTCCTGATGGAAGCAAGCTTGAGGTCATGACTTGCATGCCAAGA TCTGATCTTTACATAAATCTTCCCGCTCTGCGCAAATTGGACAACATGCTCCTTGAAATGTTGGACAGTTTTGAAACTACAGACTTCTGGTATGTGGATC AAGGCATGATAGCTGCTGAAGCAGATGGTTCCTCATCTTTTCGGCGAAACCTTCCTCGCCAAGAGGAGAAATGGTGGCTCCCTGTGCCACGTGTACCAGC TGGTGGTCTCCATGAAGATTCAAGGAAGCAATTGCAGCACAAGAGGGATTGTACTAACCAGATACTCAAGGCTGCAATGGCTATCAACAGTAGTACTCTT TCCGATATGGAAGTTCCTGATTCGTACTTTGATGCTCTTCCAAAGAATGGAAAGGCGAGCTTAGGGGACCTCATTTATCGATACATTTCGTCAGATCAGT TCTCTCCTGATTCGCTCCTCGATTGTCTCGACCTGTCAACTGAACATCAAGCCATAGAACTTGCGAATCGAGTTGAGTCATCCATCTATGTGTGGAGAAA GAGGACCAACCCGAAATGTTCTGGCAGTAGTACAGCTCGGTCAAGCTCGAAATCTTCGTGGGAGCTGGTGAAAGAGTTGATGGTTGATCCGGAGAAGAGG GAATTGCTTGTCGATCGAGCAGAAAGTTTACTGCTTTGCCTCAAGCAGAGGTTCCCTGGCCTACCCCAGACAGCATTGGACATGAGCAAAATCCTACACA ACAAGGATGTTGGAAAGTCGATTCTGGAGAGCTACTCGAGGGTTTTGGAGAGCTTGGCGTTCAACATCGTGGCACGAATCGACGACCTGCTCTACGTAGA TGATCTGACCAAGCATTCGGACCAATTCTCATCCATATCGAAAGTGAGTGTGATTGCTCACAGGAGTGTGACGATTCCTTACTCTGTCCCGATGTCGAGC AGTCCGTTCAAAACAACATTCACCACCCCGAGCTTTTCACCAGCGTTGAAGCCAGACACCACCACCAAATCTCCCTTCAGAACTAGTGGGAAAATTCCTC AGAGAGGGTTTGGTGTGAAGAAGGTGCTGACAGAATATCTGAACAATAATGAAGGCAAGTCCCCCACCAAGGCTTGTCAAAATGAAGGAGTAGCAGAGAA GAAATTTGACAAGGCTGCAACTTCTCAACGTGGGTTCGAGTCGTGTGAGCGTTTACGAGATGCTATCAGATCGAACAGCAGCTCACCAGTTCAAGATTAA
AA sequence Show only first row Show all	>Lus10021500 pacid=23179206 polypeptide=Lus10021500 locus=Lus10021500.g ID=Lus10021500.BGIv1.0 annot-version=v1.0 MDRAFIHQQERETEPNDNLLCCAPPFCVLAKKKTKKKKKNTSCSFSLFGLQVSKYVLLHWCSDSDKARSSIPATGFFSLGKINNNNLSGGMVVMNNSVFC HSPHGGEEGFMANPVRTFGEFMEEKYRESSSSSDFLTSEATGIEDLHSRYSSGEESNSPAPSSSLGWRKDEEVPDCTSTTVSTEKAHLADARKSEEHSSS ISEIEMMKERFSKLLLGEDMSGCGNGVCTALAVSNAITNLCATLFGQLWRLEPLPFEKKAMWRREMEWLLCVSDHIVELIPSWQTFPDGSKLEVMTCMPR SDLYINLPALRKLDNMLLEMLDSFETTDFWYVDQGMIAAEADGSSSFRRNLPRQEEKWWLPVPRVPAGGLHEDSRKQLQHKRDCTNQILKAAMAINSSTL SDMEVPDSYFDALPKNGKASLGDLIYRYISSDQFSPDSLLDCLDLSTEHQAIELANRVESSIYVWRKRTNPKCSGSSTARSSSKSSWELVKELMVDPEKR ELLVDRAESLLLCLKQRFPGLPQTALDMSKILHNKDVGKSILESYSRVLESLAFNIVARIDDLLYVDDLTKHSDQFSSISKVSVIAHRSVTIPYSVPMSS SPFKTTFTTPSFSPALKPDTTTKSPFRTSGKIPQRGFGVKKVLTEYLNNNEGKSPTKACQNEGVAEKKFDKAATSQRGFESCERLRDAIRSNSSSPVQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02010		ATROPGEF7, ROPG...	RHO guanyl-nucleotide exchange...		Lus10021500 [exp]	0	1
AT5G02010		ATROPGEF7, ROPG...	RHO guanyl-nucleotide exchange...		Lus10022601 [exp]	1.0	0.9194
AT4G18260			Cytochrome b561/ferric reducta...		Lus10007333 [exp]	3.0	0.8501
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10027476 [exp]	13.0	0.8569
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10036508 [exp]	15.0	0.8140
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10033302 [exp]	15.9	0.8076
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028401 [exp]	19.1	0.8346
AT1G06980			unknown protein		Lus10038171 [exp]	22.1	0.7920
AT4G13710			Pectin lyase-like superfamily ...		Lus10011758 [exp]	22.8	0.8227
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Lus10011426 [exp]	25.3	0.8274
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10036586 [exp]	25.5	0.8332

Compare expression of checked genes

Lus10021500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.