Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09250 272 / 2e-92 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) AT4G10925 71 / 1e-14 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022605 [exp] 347 / 3e-123 AT3G09250 265 / 3e-91 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Lus10023064 [exp] 71 / 3e-14 AT4G10925 333 / 5e-116 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Lus10032407 [exp] 68 / 4e-13 AT4G10925 338 / 2e-118 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Lus10001815 [exp] 56 / 3e-09 AT4G10925 317 / 4e-111 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G105600 [exp] 315 / 3e-109 AT3G09250 281 / 4e-96 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Potri.006G093700 [exp] 309 / 8e-106 AT3G09250 266 / 5e-89 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Potri.003G141600 [exp] 72 / 2e-14 AT4G10925 350 / 9e-123 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Potri.001G089600 [exp] 67 / 1e-12 AT4G10925 347 / 2e-121 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Potri.010G161600 [exp] 40 / 0.001 AT2G03390 417 / 6e-147 uvrB/uvrC motif-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0671 [flax] [poplar] AAA_lid PF02151 [flax] [poplar] UVR UvrB/uvrC motif CL0051 [flax] [poplar] NTF2 PF08332 [flax] [poplar] CaMKII_AD Calcium/calmodulin dependent protein kinase II association domain
Representative CDS sequence Show only first row Show all	>Lus10021504 pacid=23179146 polypeptide=Lus10021504 locus=Lus10021504.g ID=Lus10021504.BGIv1.0 annot-version=v1.0 ATGGCGCTTCTTGGTTCTGCAATCTGCTACAAAGTGAATCCCATAGATATTGGTGAATACATCCGGCTTCCATCTTCGGGCTTAGACAATCGGAAAAAGC TTCTCCTACGAGATCCATCCTCGCATGGAAATTGCCGCGCAATTCTGGCCACTATGCGGCAATGGTGTCCGCGTCTGCAAATTGAAAGATCACCACTCGC AAGCTATGCTTCATCACGACTCTCATCGTTTAGACAATGTAGAGTGGCGAGCGGGGAATCGGAAGGAATGGTGATCGGTGGAAACACAGATGAACAAACC TTGACAAACGACTTGCAGATTGCGATAGAAGAAGAGGACTACGCCAAAGCTGCCAAAATCAGGGACAGCCTAAGAGAGCTCCAAGCAGACAGCGAGTCCT CGGTGCTTTCGGCAAACTCCCGATTCTACGAAGCATTCAGGAAGGGTGATCTAGCTACTATGCAACGTCTGTGGTCGAAGGGTGAGAATGCGTGCTGTGT GCATCCCGGTGCGAGTGGAGTTCTCGGTTACGATCATGTCATGGAAAGCTGGGAGCTGGTGTGGATGAACTATGATTTCCCGCTAGAGATCGAGCTGAAA AACGTCCGAGTTCATTTCAGAGGGGATGTCGGTTACGTTACTTGCGTAGAGTTCATCAGGACGACTGGTGGGAGTAGTTGGGGAGCTCAGTTTGTTACCA ATGTGTTTGAGAGGATTGATGGTCAGTGGTTTATCTGCGTTCACCATGCTTCCCCCGTTGACCTCTAG
AA sequence Show only first row Show all	>Lus10021504 pacid=23179146 polypeptide=Lus10021504 locus=Lus10021504.g ID=Lus10021504.BGIv1.0 annot-version=v1.0 MALLGSAICYKVNPIDIGEYIRLPSSGLDNRKKLLLRDPSSHGNCRAILATMRQWCPRLQIERSPLASYASSRLSSFRQCRVASGESEGMVIGGNTDEQT LTNDLQIAIEEEDYAKAAKIRDSLRELQADSESSVLSANSRFYEAFRKGDLATMQRLWSKGENACCVHPGASGVLGYDHVMESWELVWMNYDFPLEIELK NVRVHFRGDVGYVTCVEFIRTTGGSSWGAQFVTNVFERIDGQWFICVHHASPVDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09250			Nuclear transport factor 2 (NT...		Lus10021504 [exp]	0	1
AT3G09250			Nuclear transport factor 2 (NT...		Lus10022605 [exp]	1.4	0.9160
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10021701 [exp]	2.0	0.9212
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Lus10030658 [exp]	2.4	0.8790
AT5G52100		CRR1	chlororespiration reduction 1,...		Lus10005771 [exp]	3.3	0.8680
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Lus10015466 [exp]	3.5	0.9157
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	5.3	0.9018
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10003245 [exp]	6.3	0.8859
AT2G48120		PAC	pale cress protein (PAC) (.1),...		Lus10000662 [exp]	6.5	0.8605
AT2G25840		OVA4	ovule abortion 4, Nucleotidyly...		Lus10005494 [exp]	6.9	0.8777
AT1G15720	MYB	TRFL5	TRF-like 5 (.1)		Lus10024200 [exp]	7.9	0.8436

Compare expression of checked genes

Lus10021504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.