Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09920 1133 / 0 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT1G60890 726 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G10900 716 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G77740 611 / 0 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT1G21980 605 / 0 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT2G41210 594 / 0 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT3G56960 585 / 0 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT3G07960 571 / 0 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT2G26420 552 / 0 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT1G01460 259 / 2e-78 ATPIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022606 [exp] 1575 / 0 AT3G09920 1179 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10014408 [exp] 1343 / 0 AT3G09920 1228 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10023909 [exp] 1332 / 0 AT3G09920 1210 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10015456 [exp] 747 / 0 AT1G60890 1036 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10001377 [exp] 745 / 0 AT1G60890 1044 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10020821 [exp] 706 / 0 AT1G60890 935 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10012689 [exp] 704 / 0 AT1G60890 932 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10027306 [exp] 583 / 0 AT3G56960 1185 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10039011 [exp] 580 / 0 AT3G56960 1174 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G121200 [exp] 1247 / 0 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.001G211200 [exp] 746 / 0 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.003G019100 [exp] 715 / 0 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.005G172800 [exp] 591 / 0 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.016G036800 [exp] 589 / 0 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.003G196000 [exp] 587 / 0 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.001G027900 [exp] 586 / 0 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.002G088100 [exp] 535 / 3e-179 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.004G139900 [exp] 455 / 3e-149 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 447 / 6e-146 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10021505 pacid=23179203 polypeptide=Lus10021505 locus=Lus10021505.g ID=Lus10021505.BGIv1.0 annot-version=v1.0 ATGTCTGCTCAAGTGGCCATCGTAGGTGATGGGGAAAGAGGACTAACTTTAGCAGACAGAACAAAGTCAGTTGATGCCATCTCTAGTAGAGATTTCTCTT ATCTTTCTGTCAACGGAGATGCAATTCCCAGGTTCTCTGATAGCCCTTCTTTCAGAACCGGGGAGCTCTTCCTTACGAATGGGGATTCCTATCTTGGTTC ACTGCTGGGGAATGTACCAGAAGGCAGAGGGAAATATGTGTGGTCAGATGGATGTACATACGATGGTGAATGGAGATGTGGGATAAGAAATGGAAGTGGG AGGATTCAGTGGCCCTCTGGAGCAGCTTACGAAGGAGAATTCTCAGGTGGTTATATGCATGGAAGTGGTAGCTACATCAGTGCCAATAAAATCAGATACA GAGGAAGGTGGCGGTTGAATCTCAAGCATGGCTTGGGATACCAAGTTTATCCTAATAGGGATGTCTTTGAAGGGTCGTGGATACAAGGAACAGCAGAAGG GCCTGGAAAGTACACCTGGGCTAATGGCAATATCTATATGGGGAACATGAAAGGAGGGAAGATGACAGGGAAAGGGACTCTAACTTGGGTAAATGGAGAC TCATTTGAAGGAAGTTGGCTAAATGGAATGATGCATGGAGTTGGAGCATACACCTGGAGGGATGGTGGCTGCTATGTTGGAACTTGGACTCACGGCTTGA AGGATGGAAAGGGATCTTTCTATCCAAGTGGGAGTCGATATTCGTCAGTACAAGAACGGTACCTCAATGCTTTGAGAAAAAGAGGACTCCTCCCTGATAT GAGGAAGAACCATGCACATATTCATCACCATCCATCTTCAGTGGACATGGATCAACGGTCTCACCATCGTGATTCGTCTGAGAACGTGTCTCGAAGCAGG AATGTATCGCTGGAGAGACGTTGGAGCCTCGAGGTATCGATCGAGAAGGAGATTGCTCATGATTCGACATTGTTGGAATCGTCTGAAGTTAATGGAGGAG TGGTTCCACCTATTCTGGAAAGGGAATATATGCAAGGTGTTCTAATCAGTGAGATTGTTCTGAATGATACCTTTTCATCAATGTCTAGAAGGGCGAGACG GCGACAGGAGAAGCTTGTTAGAGAGATCAAACGGCCTGGTGAAACTATTCTCAAAGGGCATCGGAGTTATGACTTGATGCTCAGTTTGCAGCTTGGTATC AGGTATACTGTTGGGAAAATTACACCTGTACAAAGACGAGAAGTCCGAACATCGGATTTCGGTCCAAGGGCAAGCTTCTGGATGCAGTTCCCCAAGAATG GATCTCAGTTAACACCATCCCATCGATCTGATGATTTCAAGTGGAAGGACTACTGTCCTATGGTCTTCAGGAATTTGAGGGAGATGTTCAAGATCGATGC TGCCGATTACATGATGTCCATATGTGGAAATGATGCTCTTAGGGAGCTCTCTTCTCCCGGGAAAAGTGGCAGCATTTTCTTCTTGTCTCAAGATGACCGC TTCATGATCAAGACACTCAGAAAGTCTGAAGTCAAGGTGCTTCTGAATATGCTTCCTGATTACCATCACCACGTGAGGACCTACGAAAACACGCTCATAA CAAAGTTCTTCGGCCTTCATAGGATCAAACCTTCAAGTGGTCAGAAGTTTCGCTTTGTAGTCATGGGGAACATGTTCTGCACAGAAGTGAGAATCCACCG ACGGTTCGATCTGAAAGGATCTTCGCTTGGCCGATCCACCGAGAAGATCGAAATTGATGAGAACACTACCCTCAAGGACTTAGATCTCAACTACAGCTTC TACTTGGAACCTTCATGGCGAGAGTCTTTACTAAAGCAGATAGAGACAGACAGCAAATTCTTGGAAGCAAATCGAATAATGGATTACAGCCTTCTACTTG GTGTTCATTATCGAGCACCGCAGCACCTTCGACCAATAACGTTGTTGAATCGAAACGAAGGATTGGGAGTTCTTGCAGAGGAAGATACCATTGAAGACGA AACGTACCCGCAAGGCCTCGTCCTCGTCCCTCGTGGGGAGGAAGATGATAGCAGCGTTGTCGTCGGTCCTCATGTTAGAGGCAGCCGGCTGAGAGCTGCT GGCGACGAGGAAGTAGATCTCCTGCTTCCTGGTACTTCAAGGCTCCAAATCCAGCTTGGGGTAAACATGCCAGCAAGAGCAGAACAGATCGCTGAGGAGG AGAAACAGAAGTTTCATGGAGTCTACGACGTCGTCCTGTACCTCGGGATAATCGACATCCTCCAAGAGTACAACATTAGCAAGAAGATCGAGCATGCTTA CAAATCTTTCCAGTTCGACTCGCTGTCAATCTCGGCCGTTGATCCTACGTTCTACTCCAAACGCTTCCTGGAGTTCATTCAGAAGGTGTTCCCTCCCAAT GGCATCAACCATTAA
AA sequence Show only first row Show all	>Lus10021505 pacid=23179203 polypeptide=Lus10021505 locus=Lus10021505.g ID=Lus10021505.BGIv1.0 annot-version=v1.0 MSAQVAIVGDGERGLTLADRTKSVDAISSRDFSYLSVNGDAIPRFSDSPSFRTGELFLTNGDSYLGSLLGNVPEGRGKYVWSDGCTYDGEWRCGIRNGSG RIQWPSGAAYEGEFSGGYMHGSGSYISANKIRYRGRWRLNLKHGLGYQVYPNRDVFEGSWIQGTAEGPGKYTWANGNIYMGNMKGGKMTGKGTLTWVNGD SFEGSWLNGMMHGVGAYTWRDGGCYVGTWTHGLKDGKGSFYPSGSRYSSVQERYLNALRKRGLLPDMRKNHAHIHHHPSSVDMDQRSHHRDSSENVSRSR NVSLERRWSLEVSIEKEIAHDSTLLESSEVNGGVVPPILEREYMQGVLISEIVLNDTFSSMSRRARRRQEKLVREIKRPGETILKGHRSYDLMLSLQLGI RYTVGKITPVQRREVRTSDFGPRASFWMQFPKNGSQLTPSHRSDDFKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGKSGSIFFLSQDDR FMIKTLRKSEVKVLLNMLPDYHHHVRTYENTLITKFFGLHRIKPSSGQKFRFVVMGNMFCTEVRIHRRFDLKGSSLGRSTEKIEIDENTTLKDLDLNYSF YLEPSWRESLLKQIETDSKFLEANRIMDYSLLLGVHYRAPQHLRPITLLNRNEGLGVLAEEDTIEDETYPQGLVLVPRGEEDDSSVVVGPHVRGSRLRAA GDEEVDLLLPGTSRLQIQLGVNMPARAEQIAEEEKQKFHGVYDVVLYLGIIDILQEYNISKKIEHAYKSFQFDSLSISAVDPTFYSKRFLEFIQKVFPPN GINH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10021505 [exp]	0	1
AT2G20030			RING/U-box superfamily protein...		Lus10034953 [exp]	3.3	0.9326
AT1G78990			HXXXD-type acyl-transferase fa...		Lus10000557 [exp]	5.7	0.9126
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10016388 [exp]	5.8	0.9292
AT3G02645			Plant protein of unknown funct...		Lus10019721 [exp]	7.3	0.9217
AT5G40240			nodulin MtN21 /EamA-like trans...		Lus10039481 [exp]	7.9	0.9192
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10033400 [exp]	8.1	0.9272
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10001316 [exp]	10.0	0.9224
AT4G21690		ATGA3OX3	ARABIDOPSIS THALIANA GIBBERELL...		Lus10013137 [exp]	13.2	0.8893
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10014384 [exp]	13.4	0.9110
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10022606 [exp]	14.0	0.9109

Compare expression of checked genes

Lus10021505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.