Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32600 365 / 1e-127 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022607 [exp] 348 / 8e-120 AT2G32600 334 / 4e-115 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G097600 [exp] 388 / 2e-135 AT2G32600 370 / 2e-129 hydroxyproline-rich glycoprotein family protein (.1) Potri.006G121300 [exp] 387 / 3e-135 AT2G32600 372 / 4e-130 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021506 pacid=23179183 polypeptide=Lus10021506 locus=Lus10021506.g ID=Lus10021506.BGIv1.0 annot-version=v1.0 ATGGATAGAGAATGGGGCTCCAAGCCAGGAAGCGGAGGTGCCGCCTCCTCTCAGAACGAAGCAATCGACCGCCGTGAAAGGCTCCGGCGACTGGCTCTGG AGACGATCGATCTCGCGAAGGATCCCTATTTCATGCGCAATCACCTAGGAAGTTATGAGTGTAAGCTGTGTCTGACTTTGCACAACAATGAAGGGAACTA CCTGGCGCACACGCAAGGGAAGCGTCATCAGACGAATCTGGCGAAGAGAGCTGCTCGCGAGGCTAAGGAATCCCCTGCTCTCCCTCAGCCTAACAAGCGC AAAGTTAACATTAAAAAGTCAGTCAAAATTGGTAGACCTGGATACAGAGTCACTAAACAGTTTGATCCAGAGACAAAGCAAAGGTCCCTTCTCTTTCAGA TTGAATACCCTGAAATTGAAGACAACACAAAGCCAAGGCACAGGTTTATGTCGTCCTATGAGCAGAAAGTGCAATCGTATGATAAGAGCTACCAGTATCT TTTATTCGCAGCAGATCCATACGAGATCGTTGCCTTCAAGGTTCCCAGCACAGAAATAGACAAGTCAACTCCCAAGTTCTTCTCGCATTGGGATCCCGAC TCGAAGATGTTCACTCTGCAGTTGTACTTTAAAACGAAACCACCGGAAGCCAACAAGCCTCCGGCAACGAACGGCTCGGCTGCTCCTGGTGTTCCTCCGC CCCCACCTCCGCCAGCAGGAGCAAGACCACCTCCACCGCCGGTTGGTGGATCACTGCCGCCTCCACCGCCTCCCATGGGTAATGGTCCTCGGCCTATGCC ACCGGGGGAAGCTCCACCTGCCCCACCTCCGCCTCCTGGTGGAAGTGGAATGCCGCCGAACTTCACTCCTGGTGCTCCGGTGGGTAGGCCTCCGATGCCT GGCCCTCCTCCACTAGGCTTCCCTGGGCAACATCCTCCTCCTCCTCCTCCTCCCAACATGGGATAG
AA sequence Show only first row Show all	>Lus10021506 pacid=23179183 polypeptide=Lus10021506 locus=Lus10021506.g ID=Lus10021506.BGIv1.0 annot-version=v1.0 MDREWGSKPGSGGAASSQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKESPALPQPNKR KVNIKKSVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDNTKPRHRFMSSYEQKVQSYDKSYQYLLFAADPYEIVAFKVPSTEIDKSTPKFFSHWDPD SKMFTLQLYFKTKPPEANKPPATNGSAAPGVPPPPPPPAGARPPPPPVGGSLPPPPPPMGNGPRPMPPGEAPPAPPPPPGGSGMPPNFTPGAPVGRPPMP GPPPLGFPGQHPPPPPPPNMG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32600			hydroxyproline-rich glycoprote...		Lus10021506 [exp]	0	1
AT2G32600			hydroxyproline-rich glycoprote...		Lus10022607 [exp]	1.0	0.9267
AT5G44170			S-adenosyl-L-methionine-depend...		Lus10039876 [exp]	2.2	0.8728
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Lus10042169 [exp]	2.4	0.8837
AT1G15190			Fasciclin-like arabinogalactan...		Lus10015081 [exp]	2.6	0.8632
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Lus10022876 [exp]	5.1	0.8861
AT1G28120			unknown protein		Lus10030429 [exp]	7.7	0.8461
AT4G34880			Amidase family protein (.1)		Lus10027853 [exp]	8.0	0.8625
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10018347 [exp]	8.1	0.8247
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Lus10004261 [exp]	10.1	0.8068
AT5G44500			Small nuclear ribonucleoprotei...		Lus10038421 [exp]	10.8	0.8747

Compare expression of checked genes

Lus10021506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.