Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09890 204 / 8e-67 Ankyrin repeat family protein (.1.2) AT4G19150 78 / 2e-17 Ankyrin repeat family protein (.1.2) AT2G25600 77 / 2e-16 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT5G40160 69 / 5e-14 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT2G03430 68 / 9e-14 Ankyrin repeat family protein (.1) AT2G28840 67 / 3e-13 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) AT4G32500 66 / 1e-12 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT2G26650 65 / 3e-12 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT4G35450 61 / 3e-11 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT5G02620 61 / 9e-11 ATANK1, ANK1 ankyrin-like1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023911 [exp] 268 / 3e-92 AT3G09890 219 / 6e-73 Ankyrin repeat family protein (.1.2) Lus10014410 [exp] 266 / 2e-91 AT3G09890 217 / 5e-72 Ankyrin repeat family protein (.1.2) Lus10022609 [exp] 255 / 9e-88 AT3G09890 181 / 1e-58 Ankyrin repeat family protein (.1.2) Lus10014522 [exp] 73 / 3e-15 AT5G40160 322 / 3e-109 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10001414 [exp] 71 / 7e-15 AT4G19150 245 / 9e-82 Ankyrin repeat family protein (.1.2) Lus10017765 [exp] 70 / 4e-14 AT2G26650 395 / 1e-130 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10002621 [exp] 70 / 5e-14 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10033052 [exp] 69 / 1e-13 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10032165 [exp] 68 / 2e-13 AT5G40160 293 / 3e-98 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G097900 [exp] 238 / 2e-80 AT3G09890 214 / 5e-71 Ankyrin repeat family protein (.1.2) Potri.006G121500 [exp] 234 / 1e-78 AT3G09890 196 / 1e-63 Ankyrin repeat family protein (.1.2) Potri.001G130500 [exp] 72 / 3e-15 AT4G19150 222 / 1e-72 Ankyrin repeat family protein (.1.2) Potri.001G295200 [exp] 71 / 1e-14 AT5G40160 317 / 4e-108 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Potri.003G103400 [exp] 71 / 1e-14 AT4G19150 234 / 2e-77 Ankyrin repeat family protein (.1.2) Potri.018G031600 [exp] 67 / 7e-13 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.006G249900 [exp] 66 / 1e-12 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.010G161300 [exp] 64 / 2e-12 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.013G062000 [exp] 63 / 1e-11 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.001G238800 [exp] 63 / 1e-11 AT2G28840 657 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10021508 pacid=23179257 polypeptide=Lus10021508 locus=Lus10021508.g ID=Lus10021508.BGIv1.0 annot-version=v1.0 ATGGCGGTCCATCGAGACCAGCTAATCGACGATGAAGAGAACGAAGATGACGATGACGACTTGTTCCAGGTAGAGAACGCGCTCAATTTGGCCCTCGATT TGGCTAATCCTCTCCGACCAATCCTCGCCGCAGCTCGCTCCGGCGATGCTGAAGCTCTCGCTCAGACCCTAGATGATAACGATGGCAGCATTGACGAGCC ATTGGAAGATGGCGACACGGCTCTCCACCTGGCTTGTCTGTATGGCTATTCGAGCTGTGTTAGGTTACTGTTGGAAAGGGGAGCAAACATAGAGGTTAAG GATGAAGATGGAGCAATCCCTCTACATGATGCCTGTGCCGGTGGATATAATGAGATAGTGCAGCTTCTGCTAAACCATGCTAATGATGCTGAGGCTGTGA AGAGGATGCTAGAGACAATGGATGACGAGGGTGATACTCCACTCCACCACGCTGCAAGAGGGGAGCACACGGAGGTAGTGAACCTGTTGCTAGCTTCTGG CGCTTCAGTAACTCAAACAAACTCGTACGGAAAGACTCCTAGTGAGCTGGCTGATCCAGAAACAGAAGCTAGGAGAATCCTGGAAGCCAGTGCCTCATCT CAATGA
AA sequence Show only first row Show all	>Lus10021508 pacid=23179257 polypeptide=Lus10021508 locus=Lus10021508.g ID=Lus10021508.BGIv1.0 annot-version=v1.0 MAVHRDQLIDDEENEDDDDDLFQVENALNLALDLANPLRPILAAARSGDAEALAQTLDDNDGSIDEPLEDGDTALHLACLYGYSSCVRLLLERGANIEVK DEDGAIPLHDACAGGYNEIVQLLLNHANDAEAVKRMLETMDDEGDTPLHHAARGEHTEVVNLLLASGASVTQTNSYGKTPSELADPETEARRILEASASS Q

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09890			Ankyrin repeat family protein ...		Lus10021508 [exp]	0	1
AT4G03415			Protein phosphatase 2C family ...		Lus10018570 [exp]	5.2	0.7466
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Lus10013138 [exp]	8.9	0.7347
AT2G47210	MYB		myb-like transcription factor ...		Lus10021650 [exp]	11.0	0.7291
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Lus10008826 [exp]	11.6	0.7031
AT3G47630			unknown protein		Lus10024227 [exp]	21.3	0.7375
					Lus10019128 [exp]	24.3	0.7132
AT1G19980			cytomatrix protein-related (.1...		Lus10034526 [exp]	24.5	0.6565
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10003353 [exp]	25.0	0.7118
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10041492 [exp]	35.7	0.6599
AT3G01410			Polynucleotidyl transferase, r...		Lus10014521 [exp]	35.7	0.7139

Compare expression of checked genes

Lus10021508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.