Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03510 97 / 2e-24 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G28200 93 / 6e-23 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G04390 87 / 2e-20 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G10470 79 / 2e-17 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G37430 69 / 1e-14 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G28710 68 / 1e-14 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G59820 68 / 1e-14 C2H2ZnF ZAT12, RHL41 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) AT3G46080 64 / 8e-13 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G53600 63 / 1e-12 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G45120 64 / 2e-12 C2H2ZnF C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022610 [exp] 230 / 2e-77 AT2G28200 147 / 1e-43 C2H2-type zinc finger family protein (.1) Lus10023912 [exp] 127 / 2e-36 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1) Lus10021409 [exp] 93 / 4e-23 AT3G10470 157 / 4e-46 C2H2-type zinc finger family protein (.1) Lus10023540 [exp] 84 / 9e-20 AT5G04390 179 / 3e-54 C2H2-type zinc finger family protein (.1) Lus10024428 [exp] 80 / 1e-18 AT2G37430 157 / 4e-49 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10040425 [exp] 76 / 2e-17 AT5G04390 159 / 5e-48 C2H2-type zinc finger family protein (.1) Lus10030330 [exp] 74 / 2e-16 AT2G37430 125 / 2e-36 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10023433 [exp] 69 / 1e-14 AT2G28710 117 / 1e-33 C2H2-type zinc finger family protein (.1) Lus10038674 [exp] 71 / 2e-14 AT2G28200 162 / 4e-46 C2H2-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G004800 [exp] 98 / 6e-25 AT2G28200 182 / 7e-56 C2H2-type zinc finger family protein (.1) Potri.006G121600 [exp] 97 / 8e-25 AT5G04390 136 / 4e-38 C2H2-type zinc finger family protein (.1) Potri.004G216900 [exp] 94 / 2e-23 AT2G28200 172 / 4e-52 C2H2-type zinc finger family protein (.1) Potri.016G098100 [exp] 94 / 3e-23 AT2G28200 182 / 6e-56 C2H2-type zinc finger family protein (.1) Potri.010G229400 [exp] 93 / 6e-23 AT5G04390 185 / 3e-56 C2H2-type zinc finger family protein (.1) Potri.008G032300 [exp] 85 / 5e-20 AT5G04390 207 / 1e-64 C2H2-type zinc finger family protein (.1) Potri.010G209400 [exp] 74 / 6e-17 AT2G28710 129 / 2e-38 C2H2-type zinc finger family protein (.1) Potri.008G051200 [exp] 73 / 3e-16 AT2G28710 130 / 8e-39 C2H2-type zinc finger family protein (.1) Potri.009G027700 [exp] 72 / 9e-16 AT5G59820 126 / 5e-37 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) Potri.001G235800 [exp] 66 / 1e-13 AT2G37430 133 / 2e-39 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021509 pacid=23179193 polypeptide=Lus10021509 locus=Lus10021509.g ID=Lus10021509.BGIv1.0 annot-version=v1.0 ATGGCGGATACAATCGACAAGGTGGTCGTTAAGGGTAAGCGGACCAAGCGCCAGAGGCCGCTATTATTAACAGCTAATTCCAACACCAATATTCAAGTAT CGTCGGCAGCGACGACGACTTCTACGTGTTCTACGTCGGGGGAGAGCACGTGCACGGAGGAAGAGGACATGGCCAACTGCTTGATCCTGCTCGCTCAGGG GATGACTACATCGCCTGCGGAGGCGTTTGTTTATCAGTGTAAGACGTGCGATCGGTGCTTCAATTCGTTCCAGGCGCTTGGAGGTCACAGGGCGAGTCAC AAGAGGCCCAGGACGAATGAGGAGAAGAGTAACGATGTGGTGGCGGTGAAATCTGTGGATCGGAAAGAGGAATTGGATCTTTCGTTGGGGATTTTGAATT CGAAGCAGAGTAAGGTTCATGAATGTTCGATCTGCGGCGCTGGGTTTTCGTCCGGGCAGGCCGCCCGTGCTGCCGGTGAGAAGCGGATTGGAGTTGGATC TGAATTTACCGGCGCCGGAAGATGTGGATGGGCGGGAATTAAATAA
AA sequence Show only first row Show all	>Lus10021509 pacid=23179193 polypeptide=Lus10021509 locus=Lus10021509.g ID=Lus10021509.BGIv1.0 annot-version=v1.0 MADTIDKVVVKGKRTKRQRPLLLTANSNTNIQVSSAATTTSTCSTSGESTCTEEEDMANCLILLAQGMTTSPAEAFVYQCKTCDRCFNSFQALGGHRASH KRPRTNEEKSNDVVAVKSVDRKEELDLSLGILNSKQSKVHECSICGAGFSSGQAARAAGEKRIGVGSEFTGAGRCGWAGIK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03510	C2H2ZnF		C2H2-type zinc finger family p...		Lus10021509 [exp]	0	1
AT4G35350		XCP1	xylem cysteine peptidase 1 (.1...		Lus10030722 [exp]	7.0	0.9509
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10029214 [exp]	10.6	0.9502
AT3G62160			HXXXD-type acyl-transferase fa...		Lus10004527 [exp]	11.7	0.9502
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10000985 [exp]	14.8	0.9029
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10031721 [exp]	16.5	0.9498
AT1G20850		XCP2	xylem cysteine peptidase 2 (.1...		Lus10013204 [exp]	17.2	0.9497
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Lus10022610 [exp]	17.8	0.9114
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10041339 [exp]	19.1	0.9470
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10010726 [exp]	20.3	0.9464
AT5G22980		SCPL47	serine carboxypeptidase-like 4...		Lus10000147 [exp]	20.6	0.9451

Compare expression of checked genes

Lus10021509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.