Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09880 682 / 0 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G03470 662 / 0 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT4G15415 551 / 0 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G26020 548 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT1G13460 546 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G21650 544 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G54930 540 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26030 486 / 3e-170 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1) AT5G25510 481 / 3e-168 Protein phosphatase 2A regulatory B subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022612 [exp] 767 / 0 AT3G09880 770 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10023920 [exp] 729 / 0 AT5G03470 773 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10014417 [exp] 715 / 0 AT5G03470 759 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10030002 [exp] 562 / 0 AT4G15415 763 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10035321 [exp] 561 / 0 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10015144 [exp] 560 / 0 AT4G15415 753 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10032082 [exp] 543 / 0 AT4G15415 726 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10031536 [exp] 533 / 0 AT3G26020 724 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10036926 [exp] 523 / 0 AT3G26020 709 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G098400 [exp] 701 / 0 AT3G09880 743 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G122300 [exp] 682 / 0 AT3G09880 692 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.014G157000 [exp] 572 / 0 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.010G054300 [exp] 571 / 0 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G180000 [exp] 561 / 0 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.002G226200 [exp] 555 / 0 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.017G070100 [exp] 547 / 0 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.008G179900 [exp] 545 / 0 AT3G26020 731 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.010G054400 [exp] 544 / 0 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.018G034200 [exp] 486 / 6e-170 AT5G25510 809 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01603 [flax] [poplar] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Lus10021511 pacid=23179219 polypeptide=Lus10021511 locus=Lus10021511.g ID=Lus10021511.BGIv1.0 annot-version=v1.0 ATGCAATCGGTGGAGCCGCTCCCTCCGTTCCGGGACGTGCCGGTTTCCGAGCGGCAGAAGCTCTTCCTCCGGAAGCTTCAAAATTGCTGCTTCCAGTTTG ATTTCGAGGACACGCTGAACTCCGTCAGGGAGAAAGAAATCAAGAGGCAGACGCTGTTGGAGCTCGTGGATTTCATCCAATCCGGTTCGGGTAAGATCTC GGAAGTCTGTCAGGAGGAAATGATCAAAATGGTCTCCATCAACATATTCCGGAGCTTACCTCCGAATTCCCACGAGAACACAGGCCATGAGCCTGCCGAT CCTGAAGAAGAGGAGCCCTATTTGGAGCCTTCATGGCCTCATTTGCAGCTAGTTTACGAGCTCGTGTTACGATACGTGGTGTCTTCCGATACAGACACTA AGGTCGCTAAGAGGTACATTGATCATTCCTTCGTGTTCAAGTTGCTCGATTTGTTCGAGTCGGAGGATCCTCGGGAAAGAGAGTATCTAAAAACTATACT TCATAGGATTTACGGCAAGTTCATGGTGCATCGGCCCTTCATTAGGAAGGCGATAAACAACATTTTTTATCGGTTCATATACGAGACAGAGCGGCACAGT GGGATAGGAGAACTTCTGGAGATATTGGGTAGTATAATAAACGGGTTTGCCTTGCCGATGAAGGAAGAGCATAAGTTTTTCCTTGTTAGGGCGCTTATAC CGCTACATAAACCCAAGGCGATTTCGATATACCATCAGCAGTTGTCGTATTGTATAACTCAGTTCGTCGAGAAGGACTTCAAACTGGCGGATACTGTGAT CAGGGGGTTGTTGAAGTATTGGCCTGTGATTAATTGCCCCAAGGAAGTTCTGTTTCTTGGCGAGCTTGAAGAAGTGCTCGAGGCAACTAAACAGGCCGAG TTCCAGCGCTGTATGGTTCCTCTGTTCAGACAGATTGGCCGTTGCTTAACTAGTTCGCATTTTCAGGTTGCAGAGCGAGCGCTGTTCTTGTGGAACAACG AGCACGTAGTGGGGCTAATCGCTCAGAACCGGAGCGTGGTACTACCGGTGCTGTACGAAGCACTGGAGAAGAACATCCAGACGCACTGGAACCAGGCGGT GCATGGGCTTACAGTGAACGTGCGGAAGATGTTCCTCGAAATGGACGGGGAGCTGTTCGAGGAATGCCAGAGGCAGTATGAGGAGAAGGAGTCGAGAGCG AAAGATGTGGAAGAGCAGCGGGAGATGAACTGGAAGAGACTTGCGGACGTTGCTGCAGAGAGAGGAGATGACATGATGATCACTGCTTGA
AA sequence Show only first row Show all	>Lus10021511 pacid=23179219 polypeptide=Lus10021511 locus=Lus10021511.g ID=Lus10021511.BGIv1.0 annot-version=v1.0 MQSVEPLPPFRDVPVSERQKLFLRKLQNCCFQFDFEDTLNSVREKEIKRQTLLELVDFIQSGSGKISEVCQEEMIKMVSINIFRSLPPNSHENTGHEPAD PEEEEPYLEPSWPHLQLVYELVLRYVVSSDTDTKVAKRYIDHSFVFKLLDLFESEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHS GIGELLEILGSIINGFALPMKEEHKFFLVRALIPLHKPKAISIYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPVINCPKEVLFLGELEEVLEATKQAE FQRCMVPLFRQIGRCLTSSHFQVAERALFLWNNEHVVGLIAQNRSVVLPVLYEALEKNIQTHWNQAVHGLTVNVRKMFLEMDGELFEECQRQYEEKESRA KDVEEQREMNWKRLADVAAERGDDMMITA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Lus10021511 [exp]	0	1
AT5G54540			Uncharacterised conserved prot...		Lus10003594 [exp]	1.0	0.9214
AT1G15670			Galactose oxidase/kelch repeat...		Lus10013538 [exp]	2.6	0.8726
AT5G52190			Sugar isomerase (SIS) family p...		Lus10014993 [exp]	2.8	0.8844
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10017209 [exp]	3.2	0.8942
AT3G15358			unknown protein		Lus10011176 [exp]	5.5	0.8828
AT2G46940			unknown protein		Lus10009965 [exp]	5.7	0.8577
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10009876 [exp]	6.2	0.8350
AT5G67190	AP2_ERF	DEAR2	DREB and EAR motif protein 2 (...		Lus10018727 [exp]	6.9	0.8493
AT5G02020		SIS	Salt Induced Serine rich, unkn...		Lus10021101 [exp]	7.3	0.8863
AT5G59960			unknown protein		Lus10005446 [exp]	7.5	0.8542

Compare expression of checked genes

Lus10021511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.