Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39210 481 / 1e-165 Major facilitator superfamily protein (.1) AT2G28120 447 / 1e-152 Major facilitator superfamily protein (.1) AT1G74780 216 / 7e-64 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G34355 213 / 1e-62 Major facilitator superfamily protein (.1) AT5G50520 197 / 1e-56 Major facilitator superfamily protein (.1) AT5G50630 197 / 1e-56 Major facilitator superfamily protein (.1) AT4G34950 193 / 5e-55 Major facilitator superfamily protein (.1) AT2G16660 141 / 2e-36 Major facilitator superfamily protein (.1) AT3G01930 134 / 4e-34 Major facilitator superfamily protein (.1.2) AT5G14120 135 / 5e-34 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022614 [exp] 817 / 0 AT2G39210 652 / 0.0 Major facilitator superfamily protein (.1) Lus10014640 [exp] 493 / 4e-170 AT2G39210 728 / 0.0 Major facilitator superfamily protein (.1) Lus10033790 [exp] 485 / 2e-167 AT2G39210 734 / 0.0 Major facilitator superfamily protein (.1) Lus10038682 [exp] 468 / 2e-160 AT2G39210 829 / 0.0 Major facilitator superfamily protein (.1) Lus10037948 [exp] 465 / 2e-159 AT2G39210 839 / 0.0 Major facilitator superfamily protein (.1) Lus10037949 [exp] 462 / 9e-158 AT2G39210 807 / 0.0 Major facilitator superfamily protein (.1) Lus10042170 [exp] 230 / 4e-69 AT1G74780 566 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Lus10034491 [exp] 189 / 2e-53 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1) Lus10025053 [exp] 186 / 2e-52 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G133900 [exp] 585 / 0 AT2G39210 666 / 0.0 Major facilitator superfamily protein (.1) Potri.006G122400 [exp] 514 / 2e-178 AT2G39210 767 / 0.0 Major facilitator superfamily protein (.1) Potri.008G032901 [exp] 462 / 9e-158 AT2G39210 830 / 0.0 Major facilitator superfamily protein (.1) Potri.004G215600 [exp] 445 / 6e-152 AT2G28120 810 / 0.0 Major facilitator superfamily protein (.1) Potri.009G006400 [exp] 436 / 2e-148 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1) Potri.001G194500 [exp] 199 / 6e-61 AT2G28120 377 / 9e-130 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 199 / 5e-57 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 194 / 1e-55 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.015G067000 [exp] 194 / 2e-55 AT1G74780 562 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Potri.006G060900 [exp] 165 / 2e-44 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10021513 pacid=23179171 polypeptide=Lus10021513 locus=Lus10021513.g ID=Lus10021513.BGIv1.0 annot-version=v1.0 ATGGCTGAGTTCAAAAGCTGGAGGGAGATAAAAAGTTTCGGCTTTCAAATCCTTACAGGGAGATGGTTCATGGTATTTGCATCACTCCTGATCATGTCTG TAAACGGGACAAGCTACATGTTCGGCCTTTACTCGGGAGAGATCAAATCATCACTAGGCTACGATCAAACAACACTTAACAAACTGAGCTTCTACAAGGA CTTAGGAGGAAACCTGGGATTTCTTGCCGGATTTGCATATGAAGTCATCCCACCATGGATGGTTCTCTCCATCGGATCGATTATGAACTTCTGCGGTTAT TTCCTCGTCTGGTTAGCAGTCACCAACCGAATTTCGAAGCCACACGTCTGGCAAGTGTGCCTCTACATGTGTGTAGCTACACACGCTGCTTCGTATCCAA ATACTGGAGCTTTGGTCACTTGTGTAAAGAACTTCCCCGAGAATCGAGGCAGTGTCATCGGTCTGCTGAAAGGGTTGATCGGGTTGAGTGGAGCTATAAT CACACAGATTTACCATGCTTCTTATGGGAACGGCGATTCTTCCAGTGCAGTCATCTTGCTCATTGCTTGGCTCCCAGCCATTGTTCCCTTGCTGTTCTCT CCTATCGTCCGAGCCATGAAATTCGATAGGCAGGAGAAGGAACTCAAAGTGTTCTACCATTTCCTCTCCATTGCAATTGCAATTGCTGGATTCATCATGT TCATCATCATCATTCAGAACAGATTCAGCTTCAACCGAGCTGAGTACGTTGGAACTGCTTCAGTCGTTGTCCTTGCATTGCTTCTCCCTCTCGCCATTGT CGCCAGAGAAGAATTCAAGCTGTGGAGAAGCAAGAAACAAGTGGCAAACAGCCTAACAGAACTCAATCTAGTGACTGGAAATGAAAATACACTTCCACTA ACAGCTACTACGTCAGATCCCCAAAAATTGGTGCTAATACTATCATCCTGGTTCAAGAGCATATTCAATCAACCAGATAGAGGAGAAGATTACTCGATCT TACAAGCGATTTTCAGCATAGACATGGCGATCATCTTCGTGGCAACAACTTGCAGCGTCGGAGGAGCGCTGGCGGCGATCGATAACCTAGGTCAGATCGC CGAATCCCTAGGGTACAAAAACCGCACAATCTCCACCTTCATCTCTCTGATCAGCATCTGGAACTTCTTCGGCCGAGTCCTCGCCGGGTTCGCCTCCGAG ATCCTCTTAACTCGGTACAATTTCCCTCGTCCGTTGATGCTCTCGACTATAATCCTCCTCTCCTGCGTCGGCCACATGCTAATCGCCGTCGGAGTCCCTA ACTCCCTCTACTTCGCCTCCATCCTCTCCGGATTCTGCCTCGGAGCTCAGTTCCCGCTGGTCTCCGCGATCATATCCGAGATCTTTGGGCTGAAGCACTT CGCGACGTTGTATAGCGTCGGATCCGTTTCCAGCCCCGTCGGCTCGTTGATCTTCAACGTGAAAATCGCCGGTCGTCTGTACGACGAGGAAGCTCTGAGC AATTGA
AA sequence Show only first row Show all	>Lus10021513 pacid=23179171 polypeptide=Lus10021513 locus=Lus10021513.g ID=Lus10021513.BGIv1.0 annot-version=v1.0 MAEFKSWREIKSFGFQILTGRWFMVFASLLIMSVNGTSYMFGLYSGEIKSSLGYDQTTLNKLSFYKDLGGNLGFLAGFAYEVIPPWMVLSIGSIMNFCGY FLVWLAVTNRISKPHVWQVCLYMCVATHAASYPNTGALVTCVKNFPENRGSVIGLLKGLIGLSGAIITQIYHASYGNGDSSSAVILLIAWLPAIVPLLFS PIVRAMKFDRQEKELKVFYHFLSIAIAIAGFIMFIIIIQNRFSFNRAEYVGTASVVVLALLLPLAIVAREEFKLWRSKKQVANSLTELNLVTGNENTLPL TATTSDPQKLVLILSSWFKSIFNQPDRGEDYSILQAIFSIDMAIIFVATTCSVGGALAAIDNLGQIAESLGYKNRTISTFISLISIWNFFGRVLAGFASE ILLTRYNFPRPLMLSTIILLSCVGHMLIAVGVPNSLYFASILSGFCLGAQFPLVSAIISEIFGLKHFATLYSVGSVSSPVGSLIFNVKIAGRLYDEEALS N

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39210			Major facilitator superfamily ...		Lus10021513 [exp]	0	1
AT5G04910			unknown protein		Lus10028878 [exp]	5.4	0.8568
					Lus10002348 [exp]	11.0	0.7943
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10008865 [exp]	11.4	0.8428
AT2G45910			U-box domain-containing protei...		Lus10018835 [exp]	18.7	0.8426
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10026653 [exp]	21.2	0.8299
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Lus10012202 [exp]	21.8	0.8551
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10009480 [exp]	22.6	0.8412
					Lus10007802 [exp]	29.0	0.8287
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10023226 [exp]	29.3	0.8492
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10020034 [exp]	34.0	0.8231

Compare expression of checked genes

Lus10021513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.