Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27730 484 / 2e-168 Protein of unknown function (DUF1624) (.1) AT5G47900 313 / 3e-102 Protein of unknown function (DUF1624)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022615 [exp] 903 / 0 AT5G27730 532 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10020653 [exp] 480 / 5e-167 AT5G27730 624 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10010030 [exp] 340 / 2e-112 AT5G47900 433 / 2e-149 Protein of unknown function (DUF1624) Lus10039223 [exp] 273 / 3e-87 AT5G47900 349 / 1e-117 Protein of unknown function (DUF1624) Lus10027468 [exp] 264 / 2e-83 AT5G47900 380 / 9e-130 Protein of unknown function (DUF1624) Lus10019798 [exp] 236 / 6e-73 AT5G47900 329 / 5e-110 Protein of unknown function (DUF1624) Lus10014112 [exp] 196 / 3e-57 AT5G47900 237 / 4e-74 Protein of unknown function (DUF1624) Lus10036333 [exp] 184 / 4e-54 AT5G47900 269 / 6e-89 Protein of unknown function (DUF1624) Lus10000090 [exp] 132 / 1e-35 AT5G47900 174 / 5e-54 Protein of unknown function (DUF1624)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G122500 [exp] 673 / 0 AT5G27730 521 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.013G016900 [exp] 487 / 5e-170 AT5G27730 669 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.005G025200 [exp] 469 / 7e-163 AT5G27730 595 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.001G071500 [exp] 330 / 2e-108 AT5G47900 519 / 0.0 Protein of unknown function (DUF1624) Potri.014G123800 [exp] 325 / 4e-106 AT5G47900 442 / 1e-152 Protein of unknown function (DUF1624) Potri.003G159200 [exp] 307 / 1e-99 AT5G47900 492 / 1e-172 Protein of unknown function (DUF1624) Potri.004G176400 [exp] 298 / 1e-96 AT5G47900 400 / 2e-137 Protein of unknown function (DUF1624) Potri.009G136700 [exp] 286 / 5e-92 AT5G47900 395 / 2e-135 Protein of unknown function (DUF1624)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0316 [flax] [poplar] Acyl_transf_3 PF07786 [flax] [poplar] DUF1624 Protein of unknown function (DUF1624)
Representative CDS sequence Show only first row Show all	>Lus10021514 pacid=23179241 polypeptide=Lus10021514 locus=Lus10021514.g ID=Lus10021514.BGIv1.0 annot-version=v1.0 ATGAAGAATCCTGAGATTCTGGAAGAAGGGCTTGCTCACAACAAGGTGTCAATTGACAATGCAGAACCGAACGGGAATGCTACACATGGAATCAACGCGG AGAAAGAAGGGAGAAATGAAGTATCTGATCCACCGCGAGTCGAACCAAACGGAGAAAAGCAGAAGAGCAAAAGGGTTGCAACTCTGGATGCATTCAGAGG GCTTACAGTAGTGTTGATGATTCTGGTAGATAATGCTGGTGAATCGTATCCACGGATGAATCATACGCCATGGAACGGCTGCAACTTGGCGGATTTCGTC ATGCCCTTTTTCCTCTTCATTGTTGGTGTTGCAATCGCTCTGGCCTTGAAGAGAGTTCCTAAGAAGAGCGATGCTGTAAGGAGGGTACTCATGAGGACAT TGAAGCTTCTCTTTTGGGGACTTCTGTTGCAAGGAGGATATTCACACGCTCCCAATGACCTCCAATATGGAGTCGACATGAAGTTGATTCGATGGTGTGG CATTCTCCAGAGAATTGCATTAGTGTACATGATTGTGGCTCTAATAGAGACCTTCACCATCAAGCAAAGACAAGCCATCTTGAATCCTAGCCATTTCTCA ATCTTCACAGCATACCGATGGCAATGGCTTGGAGGCTTCATTGCGTTCCTTGTGTACATGATCACGACGTTTTCACTTTACGTCCCCGATTGGAGTTTCG TGAACCGCGATGAAAAGATTAGATATACGGTGAAATGCGGGATGAGGGGCCACTTTGGCCCGGCATGCAATGCTGTTGGCCACGTTGACAGAGCAGTGTG GGGTGTTAACCATCTCTATGCTTATCCAGAATGGCAGCGCCTCAAGGCTTGCACTCTCAGCTATCCTAGCTCCGGCTCTTTTCGCGACGACGCTCCTTTT TGGTGCCATGGACCATTTGAACCTGAAGGCTTATTGAGTTCAATCTCAGCTATCCTCTCTGGCACCATTGGCATTCATTATGGACATGTTTTGATCCATT TCAAGGATAACTCCGAGAGGCTCAAGCAATGGGTTTCAATAGGGGTTGGGTTGATCATCATTGCTATCATTCTCCATTTCACCGATGCTATTCCAATGAA CAAGCAGCTCTACAGCTTCAGCTACGTCTGCTTCACAGCTGGAGTTGCTGGCATCGTGTTCTCTGCCTTATATTTGCTGATTGATGTGCTGGAATGGAGA CTACCATTTGTGTTCCTCGAATGGATAGGGATGAACGCGATGCTGGTCTACGTAATGGCTGCTCAAGGCATCTTTGAAGGGTTTATCAATGGCTGGTACT ATGAATCGACCGACAAGACGTTGGTATCCTGGATCCAAAAACACGTATTCAACGACGTATGGAACTCGGAGAGGGTTGGAAACCTGTTATATGTGATATT CGGGCAGATCACATTCTGGGCAGTTGTATCTGGGATACTGCACAGAATGGGTATTTACTGGAAGCTCTGA
AA sequence Show only first row Show all	>Lus10021514 pacid=23179241 polypeptide=Lus10021514 locus=Lus10021514.g ID=Lus10021514.BGIv1.0 annot-version=v1.0 MKNPEILEEGLAHNKVSIDNAEPNGNATHGINAEKEGRNEVSDPPRVEPNGEKQKSKRVATLDAFRGLTVVLMILVDNAGESYPRMNHTPWNGCNLADFV MPFFLFIVGVAIALALKRVPKKSDAVRRVLMRTLKLLFWGLLLQGGYSHAPNDLQYGVDMKLIRWCGILQRIALVYMIVALIETFTIKQRQAILNPSHFS IFTAYRWQWLGGFIAFLVYMITTFSLYVPDWSFVNRDEKIRYTVKCGMRGHFGPACNAVGHVDRAVWGVNHLYAYPEWQRLKACTLSYPSSGSFRDDAPF WCHGPFEPEGLLSSISAILSGTIGIHYGHVLIHFKDNSERLKQWVSIGVGLIIIAIILHFTDAIPMNKQLYSFSYVCFTAGVAGIVFSALYLLIDVLEWR LPFVFLEWIGMNAMLVYVMAAQGIFEGFINGWYYESTDKTLVSWIQKHVFNDVWNSERVGNLLYVIFGQITFWAVVSGILHRMGIYWKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27730			Protein of unknown function (D...		Lus10021514 [exp]	0	1
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Lus10016480 [exp]	17.2	0.8009
AT2G29200		APUM1	pumilio 1 (.1)		Lus10004976 [exp]	26.9	0.8210
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Lus10010845 [exp]	42.4	0.8234
AT2G33820		ATMBAC1	Mitochondrial substrate carrie...		Lus10013998 [exp]	43.2	0.8068
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Lus10041433 [exp]	75.8	0.8051
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10002901 [exp]	88.0	0.8029
AT2G03670		CDC48B	cell division cycle 48B (.1)		Lus10042029 [exp]	91.5	0.7988
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10017742 [exp]	93.1	0.7520
AT3G62100	AUX_IAA	IAA30	indole-3-acetic acid inducible...		Lus10038025 [exp]	98.0	0.7955
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10034195 [exp]	100.6	0.7901

Compare expression of checked genes

Lus10021514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.