Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03455 222 / 4e-76 ACR2, ARATH;CDC25, CDC25 ARSENATE REDUCTASE 2, Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022616 [exp] 264 / 6e-93 AT5G03455 220 / 3e-75 ARSENATE REDUCTASE 2, Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10014420 [exp] 197 / 2e-63 AT5G03455 199 / 2e-63 ARSENATE REDUCTASE 2, Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10023923 [exp] 192 / 1e-61 AT5G03455 195 / 4e-62 ARSENATE REDUCTASE 2, Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G122700 [exp] 219 / 2e-75 AT5G03455 218 / 2e-74 ARSENATE REDUCTASE 2, Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00581 [flax] [poplar] Rhodanese Rhodanese-like domain
Representative CDS sequence Show only first row Show all	>Lus10021515 pacid=23179190 polypeptide=Lus10021515 locus=Lus10021515.g ID=Lus10021515.BGIv1.0 annot-version=v1.0 ATGGCTCGAAGCATATCGTACATAACAGGAACTCAGCTTCTCTCCCTCAAGCGCCGCCCAAACATCGCCATAATCGATGTCAGGGATGACGAGAGGAGCT ACGACGGTCATATCGCCGGATCTCTCCACTACGCCAGCGGCGGATTCGGGGATAAGATGTCTAGCCTGATTCAGGAGGTCAAAGGGAAGAAGGACACTCT GGTCTTCCATTGCGCTCTTAGCCAGGTTCGTGGTCCAACCTGCGCAAGAAGGCTGGCCGATTACCTAACAGAGTCGAAAGACGATGCAGGAATCAAGAAT GTGATGGTGCTGGAGCATGGGTTCAACGGCTGGGAGACTACCGGCAAACCCGTTTGTCGCTGCACTGATGTTCCTTGCAAAGGTGAATGTCTGTAA
AA sequence Show only first row Show all	>Lus10021515 pacid=23179190 polypeptide=Lus10021515 locus=Lus10021515.g ID=Lus10021515.BGIv1.0 annot-version=v1.0 MARSISYITGTQLLSLKRRPNIAIIDVRDDERSYDGHIAGSLHYASGGFGDKMSSLIQEVKGKKDTLVFHCALSQVRGPTCARRLADYLTESKDDAGIKN VMVLEHGFNGWETTGKPVCRCTDVPCKGECL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10021515 [exp]	0	1
AT4G27130			Translation initiation factor ...		Lus10015124 [exp]	2.0	0.9456
AT4G27130			Translation initiation factor ...		Lus10027181 [exp]	2.4	0.9512
AT1G68000		ATPIS1	phosphatidylinositol synthase ...		Lus10014117 [exp]	3.5	0.9383
AT2G26070		RTE1	REVERSION-TO-ETHYLENE SENSITIV...		Lus10030001 [exp]	3.5	0.9432
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10016885 [exp]	4.2	0.9367
AT4G33690			unknown protein		Lus10040497 [exp]	4.6	0.9364
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10028435 [exp]	6.9	0.9246
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10019388 [exp]	7.7	0.9267
AT3G61113			Ubiquitin related modifier 1 (...		Lus10041378 [exp]	8.1	0.9248
AT2G28430			unknown protein		Lus10021477 [exp]	9.5	0.9284

Compare expression of checked genes

Lus10021515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.