Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60800 118 / 2e-30 Heavy metal transport/detoxification superfamily protein (.1.2) AT2G36950 110 / 8e-27 Heavy metal transport/detoxification superfamily protein (.1) AT5G03380 94 / 6e-21 Heavy metal transport/detoxification superfamily protein (.1.2) AT2G28090 84 / 3e-18 Heavy metal transport/detoxification superfamily protein (.1) AT3G02960 82 / 1e-17 Heavy metal transport/detoxification superfamily protein (.1) AT5G50740 76 / 3e-15 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) AT5G24580 71 / 2e-13 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT5G63530 61 / 4e-10 ATFP3 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) AT3G56891 54 / 1e-08 Heavy metal transport/detoxification superfamily protein (.1) AT5G19090 54 / 1e-07 Heavy metal transport/detoxification superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022617 [exp] 227 / 4e-70 AT2G36950 178 / 2e-51 Heavy metal transport/detoxification superfamily protein (.1) Lus10014421 [exp] 178 / 2e-51 AT5G03380 193 / 5e-57 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10023924 [exp] 117 / 1e-29 AT5G03380 180 / 6e-54 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10021432 [exp] 108 / 8e-27 AT5G60800 158 / 1e-46 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10016133 [exp] 110 / 1e-26 AT5G60800 175 / 3e-52 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10032245 [exp] 94 / 2e-23 AT2G36950 79 / 2e-18 Heavy metal transport/detoxification superfamily protein (.1) Lus10032923 [exp] 77 / 1e-15 AT5G24580 313 / 1e-106 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10038785 [exp] 75 / 4e-15 AT5G50740 183 / 6e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10039074 [exp] 75 / 5e-15 AT5G50740 182 / 8e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G093100 [exp] 152 / 1e-42 AT2G36950 123 / 5e-32 Heavy metal transport/detoxification superfamily protein (.1) Potri.006G124800 [exp] 144 / 1e-39 AT2G36950 135 / 2e-36 Heavy metal transport/detoxification superfamily protein (.1) Potri.009G007600 [exp] 115 / 4e-29 AT5G60800 157 / 1e-45 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G214700 [exp] 113 / 3e-28 AT5G60800 142 / 7e-40 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.016G006600 [exp] 81 / 5e-17 AT5G50740 153 / 5e-45 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.006G006100 [exp] 79 / 2e-16 AT5G50740 143 / 2e-41 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.016G017600 [exp] 76 / 6e-16 AT3G02960 199 / 2e-64 Heavy metal transport/detoxification superfamily protein (.1) Potri.012G007300 [exp] 76 / 3e-15 AT5G24580 251 / 5e-82 Heavy metal transport/detoxification superfamily protein (.1.2.3) Potri.015G003900 [exp] 74 / 2e-14 AT5G24580 247 / 1e-80 Heavy metal transport/detoxification superfamily protein (.1.2.3) Potri.015G099500 [exp] 74 / 3e-14 AT5G50740 214 / 7e-68 Heavy metal transport/detoxification superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10021516 pacid=23179132 polypeptide=Lus10021516 locus=Lus10021516.g ID=Lus10021516.BGIv1.0 annot-version=v1.0 ATGGCTGCCGGCGATAAAGACGGAGGAGGAGAGAAGAAGCCTGCAGCAACTGGCGGCGAGAAGAAGGATGACGGCGGCGGGAAGTCCCCTGTCACCGTCT TCAAGATGGATATGCATTGCGAAGGATGCGCGAAGAAGATCCGCCGCGCACTCAAACACATGGACGGAGTGGAATATGTGAAGACGGACTGTGAAACCGA CAAGCTTACAGTGACCGGGAAGGTGGATCCCGGCCGGGTGAAATCGAGGATCGAGGAGAAGACTAAGAAGAAGGTGGAGATTGTTTCTCCTCAGCCGAAG AAGGACGGCGGTGGAGGCGGAACTGCTCCTGCCGGCGATAAGAAGGGCGGTGGAGGAGGAGGATCTTCGGATAAGGCGGAGGAGAAGAAACCGTCCCCAC CAAAAGAGAGTACGGTACTGCTGAAGATCAGGACTCACTGTGATGGGTGCATTCACAAGATGAAGAAGATCATCAAGAAAACCTCAGGAGTTGCTAGCGT GGTGGTTGACGCAGCAAAAGACTTGGTAACGGTGAAAGGAACAATGGACGTTAAGGAGCTGACATCGTATTTAAAAGAGAAGCTGAAAAGAAACGTTGAA GTGGTCCCGCCGGCGCCGGCATCAGCAAAGAAGGACGAGGACAAGAAACCAGCCGCCCCTGCCGCCGGCGATAAGAAGGGTAAAGAAGCAGGCGGTGGCG AGAAGAAAGAGAAAGAGAAGGAGAAAGGAAAAGAAGCAGCCGGCGGAGGAGGACAGGCGGGGAAGAAAGATGGAGAAGGCGGAGGAAAGAAAGGAGACGC CGCCGCAGCTGTTCCGAAGGCAGAGGTGAACAAAATGGAATACTATGGATACTCGCCGGAGGCGAGCTACTGGCCGGAAGAGTCGTATGGGCAGAGCAGC TACTACGTGGAACCGCCACATCAGCACCACCACCAGTACTACAACATGGATCTGCATCAGCATCACTACAGTATGGATTCGCATCAGCAACATCACTACG TTATGGAGCCACAATACATCCAGCAGGGCTACGCGCATCCTCAGTACATGCACGCGCCGCCTCCAATGGCGTCGGGGTACATGATGGAGGGTCACCACGT GCACCCTGGCCACGCCCCGCAGTTCCTCAGCGACGAGAATCCCAATGCGTGCTCGGTGATGTGA
AA sequence Show only first row Show all	>Lus10021516 pacid=23179132 polypeptide=Lus10021516 locus=Lus10021516.g ID=Lus10021516.BGIv1.0 annot-version=v1.0 MAAGDKDGGGEKKPAATGGEKKDDGGGKSPVTVFKMDMHCEGCAKKIRRALKHMDGVEYVKTDCETDKLTVTGKVDPGRVKSRIEEKTKKKVEIVSPQPK KDGGGGGTAPAGDKKGGGGGGSSDKAEEKKPSPPKESTVLLKIRTHCDGCIHKMKKIIKKTSGVASVVVDAAKDLVTVKGTMDVKELTSYLKEKLKRNVE VVPPAPASAKKDEDKKPAAPAAGDKKGKEAGGGEKKEKEKEKGKEAAGGGGQAGKKDGEGGGKKGDAAAAVPKAEVNKMEYYGYSPEASYWPEESYGQSS YYVEPPHQHHHQYYNMDLHQHHYSMDSHQQHHYVMEPQYIQQGYAHPQYMHAPPPMASGYMMEGHHVHPGHAPQFLSDENPNACSVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03380			Heavy metal transport/detoxifi...		Lus10021516 [exp]	0	1
					Lus10023874 [exp]	5.7	0.8904
AT3G21690			MATE efflux family protein (.1...		Lus10001142 [exp]	6.3	0.8854
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10026256 [exp]	7.0	0.8971
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Lus10033491 [exp]	8.7	0.9034
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10042487 [exp]	9.2	0.9040
AT3G10915			Reticulon family protein (.1.2...		Lus10034224 [exp]	9.6	0.9128
AT3G23880			F-box and associated interacti...		Lus10036065 [exp]	13.0	0.8813
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10026255 [exp]	13.5	0.8803
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Lus10002214 [exp]	14.0	0.9081
AT5G49760			Leucine-rich repeat protein ki...		Lus10007587 [exp]	14.1	0.9044

Compare expression of checked genes

Lus10021516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.