Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17030 139 / 2e-37 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G17036 119 / 1e-29 F-box family protein with a domain of unknown function (DUF295) (.1) AT1G65770 61 / 3e-10 AMR1 ascorbic acid mannose pathway regulator 1 (.1) AT1G65740 54 / 7e-08 UCL1 UPWARD CURLY LEAF1, Protein of unknown function (DUF295) (.1) AT2G26160 51 / 5e-07 F-box family protein with a domain of unknown function (DUF295) (.1) AT1G65760 51 / 6e-07 Protein of unknown function (DUF295) (.1) AT2G16290 51 / 9e-07 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G16300 49 / 2e-06 F-box family protein (.1) AT1G44080 49 / 5e-06 F-box family protein with a domain of unknown function (DUF295) (.1) AT4G35733 47 / 2e-05 F-box family protein with a domain of unknown function (DUF295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022618 [exp] 427 / 2e-150 AT2G17030 117 / 3e-30 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10023984 [exp] 193 / 3e-57 AT2G17030 336 / 2e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10025100 [exp] 187 / 6e-55 AT2G17030 335 / 4e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10012519 [exp] 164 / 1e-47 AT2G17030 115 / 2e-29 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10022650 [exp] 116 / 2e-29 AT2G17030 96 / 4e-22 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10041838 [exp] 72 / 1e-13 AT1G65770 147 / 2e-40 ascorbic acid mannose pathway regulator 1 (.1) Lus10028385 [exp] 55 / 5e-08 AT1G65770 116 / 4e-29 ascorbic acid mannose pathway regulator 1 (.1) Lus10022619 [exp] 0 / 1 AT2G17030 44 / 3e-06 F-box family protein with a domain of unknown function (DUF295) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G179685 [exp] 150 / 9e-41 AT2G17030 360 / 2e-121 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.009G140000 [exp] 148 / 1e-40 AT2G17030 370 / 6e-126 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105400 [exp] 97 / 5e-22 AT1G65770 148 / 8e-41 ascorbic acid mannose pathway regulator 1 (.1) Potri.005G105000 [exp] 91 / 2e-20 AT1G65770 124 / 8e-33 ascorbic acid mannose pathway regulator 1 (.1) Potri.005G105200 [exp] 82 / 4e-17 AT1G65770 132 / 4e-35 ascorbic acid mannose pathway regulator 1 (.1) Potri.001G277400 [exp] 79 / 9e-16 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.002G014500 [exp] 69 / 2e-12 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105100 [exp] 63 / 1e-10 AT1G65770 135 / 3e-36 ascorbic acid mannose pathway regulator 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [flax] [poplar] DUF295 Protein of unknown function (DUF295)
Representative CDS sequence Show only first row Show all	>Lus10021517 pacid=23179178 polypeptide=Lus10021517 locus=Lus10021517.g ID=Lus10021517.BGIv1.0 annot-version=v1.0 ATGGCGGACTGGTCTCGTGATCTCCCTAACGATCTACTGGACCGAATCATCAACCTTCTCGACTCCGACATAGACCTGCTCCGCTTCGGTTCCGTCTGCA GATCGTGGCATTCCTCCGCCATCGGTGCTGCTCGTCGTCGTCGTTTAACCACCGCGCTCCAAGTCCTCCCTACTGGCATCTCTGAGCGCACAATCTACCT CATCGGCCCGCCGGACCAGGGCGGTTGGCTAGTTCAGGTTGCGGACAGTAAGCGAACTCCCTGCAGTAAGCGCCTGCTCCATCCTGTAACTAACTATCAT TTCAGTTCCGACTCATTGCCAGAGAACATTCCTATGCTGGAATTTAGGGCTAAGGAATTGCATCACCTGTACATGCTGCAGAGCCTGGAAATCTCGGGTG GTACTGTACGTGAGAAAAACAGGAAGCTGGCAGTGTTGTGGTGTGATGTTGATTCTGCCGAGAGTAGCGAATTCACGCTGCTTACCATTCGTATGGGAGG TCGATTGGCAATATTTGAGAGTCTCAATCGGAAATGGACCTTGTTAGAGCACCATTGTTCCTTTTCAGATGTGATAGTTCATAAGGGGAAACTGTTTGGT CTTGATTCCGATGGTGAGTTGTTTGGTATCGATTCCACTGGGAAATTGGTGCTGGCTGCGGCTGCTAGATGTGGAATGTCAGGTAGCAAGAAGTGTTTGG TTCACTCCAAGGATGGTGAATTGCTGGCAGTGGAGATGTATTACTTTGAATGTGAGTATCCTGACTATCTTGAGTTGATTGAGTCCACAGGGATCAACAT GTTCTCCAAGCTGGACGAAGAAGAGAAGATATGGGTGAAAATTTGGAGTCTCAAGGATAATGTGCTCTTCTTGAATTACGATTTTGCCTTCCTTATCTCG TCCTCTGATCTTTATGGCTGCACTGCGAAGAACTGTGTATTATTGGCCGACACTCGCGAAGAAAGACAGCCGTGTAGAGATGGATTCTCTAATACGTTGG TGTTTGGCTTGGAACGTCGCGAAGTGATGCTATTGACAAAACGTTCAGAGTACTCCAAGCTGTTCTGGCCACCCCCAGCATGGATATCAAACCACGTCAC TGCTATAACAGCATCCGTTCCCCCATTTCAATACCAGAAAGCTGGAAAGGTTTGTCCCGGGTAA
AA sequence Show only first row Show all	>Lus10021517 pacid=23179178 polypeptide=Lus10021517 locus=Lus10021517.g ID=Lus10021517.BGIv1.0 annot-version=v1.0 MADWSRDLPNDLLDRIINLLDSDIDLLRFGSVCRSWHSSAIGAARRRRLTTALQVLPTGISERTIYLIGPPDQGGWLVQVADSKRTPCSKRLLHPVTNYH FSSDSLPENIPMLEFRAKELHHLYMLQSLEISGGTVREKNRKLAVLWCDVDSAESSEFTLLTIRMGGRLAIFESLNRKWTLLEHHCSFSDVIVHKGKLFG LDSDGELFGIDSTGKLVLAAAARCGMSGSKKCLVHSKDGELLAVEMYYFECEYPDYLELIESTGINMFSKLDEEEKIWVKIWSLKDNVLFLNYDFAFLIS SSDLYGCTAKNCVLLADTREERQPCRDGFSNTLVFGLERREVMLLTKRSEYSKLFWPPPAWISNHVTAITASVPPFQYQKAGKVCPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17030			F-box family protein with a do...		Lus10021517 [exp]	0	1
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10001271 [exp]	6.5	0.8338
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10041698 [exp]	7.1	0.8531
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10011357 [exp]	8.2	0.7607
AT2G11890			adenylate cyclases (.1.2)		Lus10024472 [exp]	8.4	0.8157
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10024811 [exp]	10.9	0.8196
AT5G42390		SPP	stromal processing peptidase, ...		Lus10021971 [exp]	12.1	0.7939
AT3G22990		LFR	LEAF AND FLOWER RELATED, ARM r...		Lus10006635 [exp]	18.2	0.8235
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Lus10041523 [exp]	19.0	0.7979
AT1G64260			MuDR family transposase (.1)		Lus10038037 [exp]	21.2	0.8070
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Lus10005149 [exp]	21.4	0.8239

Compare expression of checked genes

Lus10021517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.