Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20340 71 / 7e-17 unknown protein AT4G21920 49 / 3e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001143 [exp] 66 / 8e-15 AT4G21920 66 / 9e-15 unknown protein Lus10002068 [exp] 62 / 3e-13 AT4G21920 65 / 1e-14 unknown protein Lus10006774 [exp] 52 / 3e-09 AT4G21920 62 / 5e-13 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G139400 [exp] 71 / 5e-17 AT3G20340 47 / 5e-08 unknown protein Potri.011G003100 [exp] 67 / 4e-15 AT3G20340 60 / 1e-12 unknown protein Potri.004G015900 [exp] 64 / 5e-14 AT4G21920 55 / 1e-10 unknown protein Potri.001G435400 [exp] 63 / 7e-14 AT3G20340 42 / 1e-05 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021518 pacid=23159112 polypeptide=Lus10021518 locus=Lus10021518.g ID=Lus10021518.BGIv1.0 annot-version=v1.0 ATGGGTAATTGCTTGCGACGGGAATCTCCAATGCTATGGGGCGGTGAAGACTGGAGCTTCTCTCCCATCCCCAACGAACTCTACGCCGTCACCAACGCCA GACAAAACAGAGGATTCCGCGAAAAAGACGAGGAAGGGGAAGACAATATTCTCCTGGGTGGTGATCAGAATAGCCGGGGATTCATAAATTCGACATCAAT TGAACCGGTGGAGGCAGCGACGGAGGTTAAGATCAAGATAACTAAGAAGCAGCTGGAGGAGTTGCTGGGGAGGGTGGATGTGAAGCAACTCTCCGTACAA CAAGTTTTGACTCATCTAATAACTGTCAGTGACAACTTTTCCGAAGCACAACACCGTTCTTGGCGGCCCAATCTGCAGAGCATTCCTGAGTAG
AA sequence Show only first row Show all	>Lus10021518 pacid=23159112 polypeptide=Lus10021518 locus=Lus10021518.g ID=Lus10021518.BGIv1.0 annot-version=v1.0 MGNCLRRESPMLWGGEDWSFSPIPNELYAVTNARQNRGFREKDEEGEDNILLGGDQNSRGFINSTSIEPVEAATEVKIKITKKQLEELLGRVDVKQLSVQ QVLTHLITVSDNFSEAQHRSWRPNLQSIPE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20340			unknown protein		Lus10021518 [exp]	0	1
AT4G27270			Quinone reductase family prote...		Lus10020076 [exp]	2.4	0.8632
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10011403 [exp]	3.2	0.8537
AT4G21215			unknown protein		Lus10018373 [exp]	6.3	0.8371
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10011578 [exp]	7.4	0.7972
					Lus10000475 [exp]	7.9	0.7625
AT5G01760			ENTH/VHS/GAT family protein (....		Lus10022753 [exp]	8.1	0.8113
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10041879 [exp]	8.9	0.8362
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10035590 [exp]	10.4	0.8078
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Lus10007613 [exp]	13.9	0.7963
					Lus10038207 [exp]	16.7	0.7922

Compare expression of checked genes

Lus10021518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.